Literature DB >> 33507975

Identification of drug combinations on the basis of machine learning to maximize anti-aging effects.

Sun Kyung Kim1, Peter C Goughnour1, Eui Jin Lee1, Myeong Hyun Kim2, Hee Jin Chae2, Gwang Yeul Yun2, Yi Rang Kim2,3, Jin Woo Choi1,4.   

Abstract

Aging is a multifactorial process that involves numerous genetic changes, so identifying anti-aging agents is quite challenging. Age-associated genetic factors must be better understood to search appropriately for anti-aging agents. We utilized an aging-related gene expression pattern-trained machine learning system that can implement reversible changes in aging by linking combinatory drugs. In silico gene expression pattern-based drug repositioning strategies, such as connectivity map, have been developed as a method for unique drug discovery. However, these strategies have limitations such as lists that differ for input and drug-inducing genes or constraints to compare experimental cell lines to target diseases. To address this issue and improve the prediction success rate, we modified the original version of expression profiles with a stepwise-filtered method. We utilized a machine learning system called deep-neural network (DNN). Here we report that combinational drug pairs using differential expressed genes (DEG) had a more enhanced anti-aging effect compared with single independent treatments on leukemia cells. This study shows potential drug combinations to retard the effects of aging with higher efficacy using innovative machine learning techniques.

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Year:  2021        PMID: 33507975      PMCID: PMC7843016          DOI: 10.1371/journal.pone.0246106

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  53 in total

Review 1.  A review of connectivity map and computational approaches in pharmacogenomics.

Authors:  Aliyu Musa; Laleh Soltan Ghoraie; Shu-Dong Zhang; Galina Glazko; Olli Yli-Harja; Matthias Dehmer; Benjamin Haibe-Kains; Frank Emmert-Streib
Journal:  Brief Bioinform       Date:  2018-05-01       Impact factor: 11.622

2.  TensorFlow: Biology's Gateway to Deep Learning?

Authors:  Ladislav Rampasek; Anna Goldenberg
Journal:  Cell Syst       Date:  2016-01-27       Impact factor: 10.304

3.  Chemical and structural diversity in cyclooxygenase protein active sites.

Authors:  Ryan G Huff; Ersin Bayram; Huan Tan; Stacy T Knutson; Michael H Knaggs; Allen B Richon; Peter Santago; Jacquelyn S Fetrow
Journal:  Chem Biodivers       Date:  2005-11       Impact factor: 2.408

Review 4.  Chlorzoxazone hepatotoxic reactions. An analysis of 21 identified or presumed cases.

Authors:  B J Powers; E L Cattau; H J Zimmerman
Journal:  Arch Intern Med       Date:  1986-06

5.  Sildenafil: an orally active type 5 cyclic GMP-specific phosphodiesterase inhibitor for the treatment of penile erectile dysfunction.

Authors:  M Boolell; M J Allen; S A Ballard; S Gepi-Attee; G J Muirhead; A M Naylor; I H Osterloh; C Gingell
Journal:  Int J Impot Res       Date:  1996-06       Impact factor: 2.896

6.  Autophagy induction by SIRT6 through attenuation of insulin-like growth factor signaling is involved in the regulation of human bronchial epithelial cell senescence.

Authors:  Naoki Takasaka; Jun Araya; Hiromichi Hara; Saburo Ito; Kenji Kobayashi; Yusuke Kurita; Hiroshi Wakui; Yutaka Yoshii; Yoko Yumino; Satoko Fujii; Shunsuke Minagawa; Chikako Tsurushige; Jun Kojima; Takanori Numata; Kenichiro Shimizu; Makoto Kawaishi; Yumi Kaneko; Noriki Kamiya; Jun Hirano; Makoto Odaka; Toshiaki Morikawa; Stephen L Nishimura; Katsutoshi Nakayama; Kazuyoshi Kuwano
Journal:  J Immunol       Date:  2013-12-23       Impact factor: 5.422

7.  Phase 1 study of the histone deacetylase inhibitor vorinostat (suberoylanilide hydroxamic acid [SAHA]) in patients with advanced leukemias and myelodysplastic syndromes.

Authors:  Guillermo Garcia-Manero; Hui Yang; Carlos Bueso-Ramos; Alessandra Ferrajoli; Jorge Cortes; William G Wierda; Stefan Faderl; Charles Koller; Gail Morris; Gary Rosner; Andrey Loboda; Valeria R Fantin; Sophia S Randolph; James S Hardwick; John F Reilly; Cong Chen; Justin L Ricker; J Paul Secrist; Victoria M Richon; Stanley R Frankel; Hagop M Kantarjian
Journal:  Blood       Date:  2007-10-25       Impact factor: 22.113

8.  Synthesis, characterization and anti-breast cancer activity of new 4-aminoantipyrine-based heterocycles.

Authors:  Mostafa M Ghorab; Marwa G El-Gazzar; Mansour S Alsaid
Journal:  Int J Mol Sci       Date:  2014-05-02       Impact factor: 5.923

9.  Vorinostat induces apoptosis and differentiation in myeloid malignancies: genetic and molecular mechanisms.

Authors:  Gabriela Silva; Bruno A Cardoso; Hélio Belo; António Medina Almeida
Journal:  PLoS One       Date:  2013-01-08       Impact factor: 3.240

10.  PDTD: a web-accessible protein database for drug target identification.

Authors:  Zhenting Gao; Honglin Li; Hailei Zhang; Xiaofeng Liu; Ling Kang; Xiaomin Luo; Weiliang Zhu; Kaixian Chen; Xicheng Wang; Hualiang Jiang
Journal:  BMC Bioinformatics       Date:  2008-02-19       Impact factor: 3.169

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