Literature DB >> 33505962

New Technologies to Study Functional Genomics of Age-Related Macular Degeneration.

Tu Nguyen1,2, Daniel Urrutia-Cabrera1,2, Roxanne Hsiang-Chi Liou1,2, Chi D Luu1,2, Robyn Guymer1,2, Raymond Ching-Bong Wong1,2.   

Abstract

Age-related macular degeneration (AMD) is the most common cause of irreversible vision loss in people over 50 years old in developed countries. Currently, we still lack a comprehensive understanding of the genetic factors contributing to AMD, which is critical to identify effective therapeutic targets to improve treatment outcomes for AMD patients. Here we discuss the latest technologies that can facilitate the identification and functional study of putative genes in AMD pathology. We review improved genomic methods to identify novel AMD genes, advances in single cell transcriptomics to profile gene expression in specific retinal cell types, and summarize recent development of in vitro models for studying AMD using induced pluripotent stem cells, organoids and biomaterials, as well as new molecular technologies using CRISPR/Cas that could facilitate functional studies of AMD-associated genes.
Copyright © 2021 Nguyen, Urrutia-Cabrera, Liou, Luu, Guymer and Wong.

Entities:  

Keywords:  CRISPR/Cas; age-related macular degeneration; induced pluripotent stem cell models; organoids; retina; single cell transcriptomics

Year:  2021        PMID: 33505962      PMCID: PMC7829507          DOI: 10.3389/fcell.2020.604220

Source DB:  PubMed          Journal:  Front Cell Dev Biol        ISSN: 2296-634X


  149 in total

Review 1.  Deciphering the Emerging Complexities of Molecular Mechanisms at GWAS Loci.

Authors:  Maren E Cannon; Karen L Mohlke
Journal:  Am J Hum Genet       Date:  2018-11-01       Impact factor: 11.025

2.  Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.

Authors:  Zhihong Zhu; Futao Zhang; Han Hu; Andrew Bakshi; Matthew R Robinson; Joseph E Powell; Grant W Montgomery; Michael E Goddard; Naomi R Wray; Peter M Visscher; Jian Yang
Journal:  Nat Genet       Date:  2016-03-28       Impact factor: 38.330

Review 3.  Autophagy in the retina: a potential role in age-related macular degeneration.

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Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

4.  Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.

Authors:  A P Voigt; S S Whitmore; M J Flamme-Wiese; M J Riker; L A Wiley; B A Tucker; E M Stone; R F Mullins; T E Scheetz
Journal:  Exp Eye Res       Date:  2019-05-08       Impact factor: 3.467

5.  Age-related maculopathy susceptibility 2 participates in the phagocytosis functions of the retinal pigment epithelium.

Authors:  Yi-Ting Xu; Ye Wang; Peng Chen; Hai-Feng Xu
Journal:  Int J Ophthalmol       Date:  2012-04-18       Impact factor: 1.779

6.  Porous poly(ε-caprolactone) scaffolds for retinal pigment epithelium transplantation.

Authors:  Kevin J McHugh; Sarah L Tao; Magali Saint-Geniez
Journal:  Invest Ophthalmol Vis Sci       Date:  2014-03-25       Impact factor: 4.799

7.  The HtrA1 serine protease is down-regulated during human melanoma progression and represses growth of metastatic melanoma cells.

Authors:  Alfonso Baldi; Antonio De Luca; Monica Morini; Tullio Battista; Armando Felsani; Feliciano Baldi; Caterina Catricalà; Ada Amantea; Douglas M Noonan; Adriana Albini; Pier Giorgio Natali; Daniela Lombardi; Marco G Paggi
Journal:  Oncogene       Date:  2002-09-26       Impact factor: 9.867

8.  Synthesis and secretion of vascular permeability factor/vascular endothelial growth factor by human retinal pigment epithelial cells.

Authors:  A P Adamis; D T Shima; K T Yeo; T K Yeo; L F Brown; B Berse; P A D'Amore; J Folkman
Journal:  Biochem Biophys Res Commun       Date:  1993-06-15       Impact factor: 3.575

9.  An enhanced CRISPR repressor for targeted mammalian gene regulation.

Authors:  Nan Cher Yeo; Alejandro Chavez; Alissa Lance-Byrne; Yingleong Chan; David Menn; Denitsa Milanova; Chih-Chung Kuo; Xiaoge Guo; Sumana Sharma; Angela Tung; Ryan J Cecchi; Marcelle Tuttle; Swechchha Pradhan; Elaine T Lim; Noah Davidsohn; Mo R Ebrahimkhani; James J Collins; Nathan E Lewis; Samira Kiani; George M Church
Journal:  Nat Methods       Date:  2018-07-16       Impact factor: 28.547

Review 10.  Cell models to study regulation of cell transformation in pathologies of retinal pigment epithelium.

Authors:  Alla V Kuznetsova; Alexander M Kurinov; Maria A Aleksandrova
Journal:  J Ophthalmol       Date:  2014-08-07       Impact factor: 1.909

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  3 in total

1.  Novel Epigenetic Clock Biomarkers of Age-Related Macular Degeneration.

Authors:  Saurav Mallik; Fran Grodstein; David A Bennett; Demetrios G Vavvas; Bernardo Lemos
Journal:  Front Med (Lausanne)       Date:  2022-06-16

Review 2.  Microbiota mitochondria disorders as hubs for early age-related macular degeneration.

Authors:  János Fehér; Ágnes Élő; Lilla István; Zoltán Zsolt Nagy; Zsolt Radák; Gianluca Scuderi; Marco Artico; Illés Kovács
Journal:  Geroscience       Date:  2022-08-18       Impact factor: 7.581

3.  Methods for in vitro CRISPR/CasRx-Mediated RNA Editing.

Authors:  Yu-Fan Chuang; Peng-Yuan Wang; Satheesh Kumar; Suraj Lama; Fan-Li Lin; Guei-Sheung Liu
Journal:  Front Cell Dev Biol       Date:  2021-06-11
  3 in total

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