| Literature DB >> 33505617 |
Ko Ito1,2, Risa Tomoki1, Naomi Ogura1,2, Kosuke Takahashi1,2, Takashi Eda1, Fumie Yamazaki1, Yugo Kato1, Alastair Goss3, Toshirou Kondoh1,2.
Abstract
The dental follicle is an ectomesenchymal tissue surrounding developing tooth germ that contains osteoblastic-lineage-committed stem/progenitor cells. MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression during stem cell growth, proliferation, and differentiation. The aim of this study was to investigate the key regulators of miRNA during osteogenic differentiation in human dental follicle cells (hDFC). We analyzed miRNA expression profiles in hDFC during osteoblastic differentiation. Expression of miR-204 was decreased in hDFC during osteogenic induction on microarray analysis. Real-time and RT-PCR analysis also showed that the expression of miR-204 was decreased in all three hDFC during osteogenic differentiation. To investigate whether miR-204 has an effect on osteogenic differentiation, miR-204 was predicted to target alkaline phosphatase (ALP), secreted protein acidic and rich in cysteine (SPARC), and Runx2 in the in the 3'-UTRs by in silico analysis. When miR-204 was transfected into hDFC, the activity of ALP and protein levels of SPARC and Runx2 were decreased. mRNA levels of ALP, SPARC and Runx2 were also decreased by miR-204 transfection. Our data suggest that miR-204 negatively regulates the osteogenic differentiation of hDFC by targeting the bone-specific transcription factor Runx2, the mineralization maker ALP and the bone extracellular matrix protein SPARC.Entities:
Keywords: Human dental follicle; Micro RNA; MicroRNA 204; Osteogenic differentiation
Year: 2020 PMID: 33505617 PMCID: PMC7816036 DOI: 10.1016/j.jds.2019.11.004
Source DB: PubMed Journal: J Dent Sci ISSN: 1991-7902 Impact factor: 2.080
Primer sequences used for real-time PCR.
| Gene | Primers | bp |
|---|---|---|
| ALP | F: 5′-gtcatcatgttcctgggaga-3′ | 123 |
| R: 5′-gaaggggaacttgtccatct-3′ | ||
| Runx2 | F: 5′-cccagaactgagaaactcaa-3′ | 125 |
| R: 5′-atcacagatggtccctaatg-3′ | ||
| SPARC | F:5′-tgtgatgaagggagagtagg-3′ | 203 |
| R: 5′-actaatcatgcatggctctc-3′ | ||
| GAPDH | F: 5′-atcaccatcttccaggag-3′ | 315 |
| R: 5′-atcgactgtggtcatgag-3′ |
Figure 1Microarray analysis of hDFC during osteogenic differentiation. miRNA expression profiles of hDFC were compared between culture Day 7 GM and Day 7 OIM (A) Among 960 miRNAs tested, 307 were expressed in hDFC (B) 68 miRNAs (up: 33 miRNA; down: 35 miRNA) showed a greater than two-fold differentiation in OIM cultures when compared with GM cultures (C) Network of miRNAs – mRNAs, as analyzed by IPA.
68 miRNAs (up: 33 miRNA; 35 miRNA) showed a greater than two-fold differentiation in OIM cultures, as compared to GM cultures.
| Fold Change up-regulated genes | ||
|---|---|---|
| MicroRNA Name | Accession No | Fold Change |
| hsa-miR-582-5p | MIMAT0003247 | 186.74 |
| hsa-let-7f-1* | MIMAT0004486 | 131.43 |
| hsv-miR-H6-3p | MIMAT0008404 | 129.72 |
| hsa-miR-1539 | MIMAT0007401 | 129.65 |
| hsa-miR-664 | MIMAT0005949 | 95.21 |
| hsa-miR-892b | MIMAT0004918 | 86.81 |
| hsa-miR-30c-2 | MIMAT0004550 | 62.65 |
| hsa-miR-889 | MIMAT0004921 | 57.02 |
| hsa-miR-129-3p | MIMAT0004605 | 56.09 |
| hsa-miR-132* | MIMAT0004594 | 48.50 |
| hsa-miR-634 | MIMAT0003304 | 48.14 |
| hsa-miR-598 | MIMAT0003266 | 47.12 |
| hsa-miR-563 | MIMAT0003227 | 45.04 |
| hsa-miR-129* | MIMAT0004548 | 44.24 |
| hsa-miR-15b* | MIMAT0004586 | 38.90 |
| hsa-miR-490-5p | MIMAT0004764 | 30.55 |
| hsa-miR-15a* | MIMAT0004488 | 30.28 |
| hsa-miR-602 | MIMAT0003270 | 30.28 |
| hsa-miR-550 | MIMAT0004800 | 25.65 |
| hsa-miR-493 | MIMAT0003161 | 24.89 |
| hsa-let-7b* | MIMAT0004482 | 6.52 |
| hsa-miR-138 | MIMAT0000430 | 4.52 |
| hsa-miR-483-3p | MIMAT0002173 | 3.57 |
| hsa-miR-431 | MIMAT0001625 | 3.17 |
| hsa-miR-33b* | MIMAT0004811 | 2.88 |
| hsa-miR- 425* | MIMAT000 1343 | 2.72 |
| hsa-miR-933 | MIMAT0004976 | 2.62 |
| hsa-miR- 33a | MIMAT0000091 | 2.39 |
| hsa-miR-100* | MIMAT0004512 | 2.26 |
| hsa-miR-370 | MIMAT0000722 | 2.09 |
| hsa-miR-487a | MIMAT0002178 | 2.07 |
| hsa-miR-551b | MIMAT0003233 | 2.06 |
| hsa-miR-30a* | MIMAT0000088 | 2.04 |
| hsa-miR-150* | MIMAT0004610 | −1122.43 |
| hcmv-miR-UL70-3p | MIMAT0003343 | −437.43 |
| hsa-miR-371-5p | MIMAT0004687 | −179.83 |
| hsa-miR-1224-5p | MIMAT0005458 | −100.76 |
| hsa-miR-629* | MIMAT0003298 | −93.75 |
| hsa-miR-663 | MIMAT0003326 | −76.00 |
| hsa-miR-630 | MIMAT0003299 | −71.15 |
| hsa-miR-424* | MIMAT0004749 | −69.67 |
| hsa-miR-204 | MIMAT0000265 | −52.35 |
| hsa-miR-373* | MIMAT0000725 | −45.45 |
| hsa-miR-193b | MIMAT0004767 | −36.16 |
| hsa-miR-671-5p | MIMAT0003880 | −32.73 |
| kshv-miR-K12-10b | MIMAT0002180 | −31.01 |
| hsa-miR-188-5p | MIMAT0000457 | −29.84 |
| hsa-miR-7-1* | MIMAT0004553 | −28.58 |
| hsa-miR-423-3p | MIMAT0001340 | −14.24 |
| hshv-miR-K12-3 | MIMAT0002193 | −11.18 |
| hsa-miR-335 | MIMAT0000765 | −8.35 |
| hsa-miR-1915 | MIMAT0007892 | −7.79 |
| hsa-miR-874 | MIMAT0004911 | −5.32 |
| hsa-miR-1181 | MIMAT0005826 | −4.00 |
| hsa-miR-1225-5p | MIMAT0005572 | −3.57 |
| hsa-miR-1207-5p | MIMAT0005871 | −3.32 |
| hsa-miR-424 | MIMAT0001341 | −3.00 |
| hsa-miR-135a* | MIMAT0004595 | −2.65 |
| hsa-miR-455-5p | MIMAT0003150 | −2.65 |
| hsa-miR-503 | MIMAT0002874 | −2.56 |
| hsa-miR-31* | MIMAT0004504 | −2.44 |
| hsa-miR-125a-3p | MIMAT0004602 | −2.36 |
| hsa-miR-296-5p | MIMAT0000690 | −2.30 |
| hsa-miR-382 | MIMAT0000737 | −2.27 |
| hsa-miR-455-3p | MIMAT0004784 | −2.25 |
| hsa-miR-638 | MIMAT0003308 | −2.21 |
| hsa-miR-210 | MIMAT0000267 | −2.08 |
| hsa-miR-34a* | MIMAT0004557 | −2.08 |
Number of target genes for miRNAs.
| Uploaded to IPA | Number of target Genes | |||
|---|---|---|---|---|
| Total | Experimentally observed | Predicted | ||
| High Confidence | Moderate Confidence | |||
| Up-regulated 33 microRNA | 10091 (1528) | 68 (11) | 2856 (504) | 8067 (1013) |
| Down-regulated 35 microRNA | 20574 (3233) | 277 (53) | 7491 (1258) | 12806 (1922) |
Figure 2Putative miR-204 binding sites in ALP, SPARC and Runx2 (Prediction scores from Target Scan database; ALP: −0.45, SPARC: −0.21, and Runx2: −0.10).
Figure 3Gene expression of miR-204 in hDFC isolated from three donors at the indicated times during osteogenic differentiation. miR-204 gene expression was examined by real-time PCR. Values represent means ± SD of the results from three independent experiments. *p < 0.05, **p < 0.01, ***p < 0.005, as compared with GM culture at the indicated time points.
Figure 4Effects of miR-204 in osteogenic differentiation of hDFC. Cells were cultured with GM, OIM + Negative control and OIM + miR-204 for the indicated time periods (A) ALP activity in hDFC during osteogenic differentiation. Values represent means ± SD of the results from three independent experiments. *p < 0.005, as compared to Negative control at the indicated time points (B) Western blot was performed to confirm that miR-204 decreased SPARC and Runx2 protein levels.
Figure 5Effects of miR-204 in osteogenic differentiation of hDFC. Cells were cultured with GM, OIM + Negative control and OIM + miR-204 for the indicated time periods. Gene expression was examined using real-time PCR. Values represent means ± SD of the results from three independent experiments. *p < 0.05, **p < 0.05, as compared to OIM and Negative control at the indicated time points.