Literature DB >> 33505026

METTL3 regulates heterochromatin in mouse embryonic stem cells.

Wenqi Xu1,2,3, Jiahui Li1,2, Chenxi He1,2, Jing Wen1,2, Honghui Ma1,2, Bowen Rong1,2, Jianbo Diao1,2, Liyong Wang1,2, Jiahua Wang1,2, Feizhen Wu1,2, Li Tan1,2, Yujiang Geno Shi4, Yang Shi5, Hongjie Shen6,7.   

Abstract

METTL3 (methyltransferase-like 3) mediates the N6-methyladenosine (m6A) methylation of mRNA, which affects the stability of mRNA and its translation into protein1. METTL3 also binds chromatin2-4, but the role of METTL3 and m6A methylation in chromatin is not fully understood. Here we show that METTL3 regulates mouse embryonic stem-cell heterochromatin, the integrity of which is critical for silencing retroviral elements and for mammalian development5. METTL3 predominantly localizes to the intracisternal A particle (IAP)-type family of endogenous retroviruses. Knockout of Mettl3 impairs the deposition of multiple heterochromatin marks onto METTL3-targeted IAPs, and upregulates IAP transcription, suggesting that METTL3 is important for the integrity of IAP heterochromatin. We provide further evidence that RNA transcripts derived from METTL3-bound IAPs are associated with chromatin and are m6A-methylated. These m6A-marked transcripts are bound by the m6A reader YTHDC1, which interacts with METTL3 and in turn promotes the association of METTL3 with chromatin. METTL3 also interacts physically with the histone 3 lysine 9 (H3K9) tri-methyltransferase SETDB1 and its cofactor TRIM28, and is important for their localization to IAPs. Our findings demonstrate that METTL3-catalysed m6A modification of RNA is important for the integrity of IAP heterochromatin in mouse embryonic stem cells, revealing a mechanism of heterochromatin regulation in mammals.

Entities:  

Year:  2021        PMID: 33505026     DOI: 10.1038/s41586-021-03210-1

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  42 in total

Review 1.  Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers.

Authors:  Hailing Shi; Jiangbo Wei; Chuan He
Journal:  Mol Cell       Date:  2019-05-16       Impact factor: 17.970

Review 2.  Dynamic control of endogenous retroviruses during development.

Authors:  Helen M Rowe; Didier Trono
Journal:  Virology       Date:  2011-01-20       Impact factor: 3.616

Review 3.  Ten principles of heterochromatin formation and function.

Authors:  Robin C Allshire; Hiten D Madhani
Journal:  Nat Rev Mol Cell Biol       Date:  2017-12-13       Impact factor: 94.444

4.  RNA fate determination through cotranscriptional adenosine methylation and microprocessor binding.

Authors:  Philip Knuckles; Sarah H Carl; Michael Musheev; Christof Niehrs; Alice Wenger; Marc Bühler
Journal:  Nat Struct Mol Biol       Date:  2017-06-05       Impact factor: 15.369

5.  Proviral silencing in embryonic stem cells requires the histone methyltransferase ESET.

Authors:  Toshiyuki Matsui; Danny Leung; Hiroki Miyashita; Irina A Maksakova; Hitoshi Miyachi; Hiroshi Kimura; Makoto Tachibana; Matthew C Lorincz; Yoichi Shinkai
Journal:  Nature       Date:  2010-02-17       Impact factor: 49.962

6.  A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin.

Authors:  Gunnar Schotta; Monika Lachner; Kavitha Sarma; Anja Ebert; Roopsha Sengupta; Gunter Reuter; Danny Reinberg; Thomas Jenuwein
Journal:  Genes Dev       Date:  2004-05-14       Impact factor: 11.361

7.  KAP1 controls endogenous retroviruses in embryonic stem cells.

Authors:  Helen M Rowe; Johan Jakobsson; Daniel Mesnard; Jacques Rougemont; Séverine Reynard; Tugce Aktas; Pierre V Maillard; Hillary Layard-Liesching; Sonia Verp; Julien Marquis; François Spitz; Daniel B Constam; Didier Trono
Journal:  Nature       Date:  2010-01-14       Impact factor: 49.962

8.  N 6-methyladenosine of chromosome-associated regulatory RNA regulates chromatin state and transcription.

Authors:  Jun Liu; Xiaoyang Dou; Chuanyuan Chen; Chuan Chen; Chang Liu; Meng Michelle Xu; Siqi Zhao; Bin Shen; Yawei Gao; Dali Han; Chuan He
Journal:  Science       Date:  2020-01-16       Impact factor: 47.728

9.  Promoter-bound METTL3 maintains myeloid leukaemia by m6A-dependent translation control.

Authors:  Isaia Barbieri; Konstantinos Tzelepis; Luca Pandolfini; Junwei Shi; Gonzalo Millán-Zambrano; Samuel C Robson; Demetrios Aspris; Valentina Migliori; Andrew J Bannister; Namshik Han; Etienne De Braekeleer; Hannes Ponstingl; Alan Hendrick; Christopher R Vakoc; George S Vassiliou; Tony Kouzarides
Journal:  Nature       Date:  2017-11-27       Impact factor: 49.962

Review 10.  The impact of transposable elements on mammalian development.

Authors:  Jose L Garcia-Perez; Thomas J Widmann; Ian R Adams
Journal:  Development       Date:  2016-11-15       Impact factor: 6.868

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  48 in total

1.  Exercise generates immune cells in bone.

Authors:  Mehmet Saçma; Hartmut Geiger
Journal:  Nature       Date:  2021-02-24       Impact factor: 49.962

2.  Dynamic control of chromatin-associated m6A methylation regulates nascent RNA synthesis.

Authors:  Wenqi Xu; Chenxi He; Emily G Kaye; Jiahui Li; Mandi Mu; Geoffrey M Nelson; Li Dong; Jiahua Wang; Feizhen Wu; Yujiang Geno Shi; Karen Adelman; Fei Lan; Yang Shi; Hongjie Shen
Journal:  Mol Cell       Date:  2022-02-25       Impact factor: 17.970

3.  METTL3 Regulates Liver Homeostasis, Hepatocyte Ploidy, and Circadian Rhythm-Controlled Gene Expression in Mice.

Authors:  Juan M Barajas; Cho-Hao Lin; Hui-Lung Sun; Frances Alencastro; Allen C Zhu; Mona Aljuhani; Ladan Navari; Selen A Yilmaz; Lianbo Yu; Kara Corps; Chuan He; Andrew W Duncan; Kalpana Ghoshal
Journal:  Am J Pathol       Date:  2021-09-29       Impact factor: 4.307

4.  METTL3 preferentially enhances non-m6A translation of epigenetic factors and promotes tumourigenesis.

Authors:  Xueju Wei; Yue Huo; Jingnan Pi; Yufeng Gao; Shuan Rao; Manman He; Qinglv Wei; Peng Song; Yiying Chen; Dongxu Lu; Wei Song; Junbo Liang; Lingjie Xu; Haixia Wang; Guolin Hong; Yuehong Guo; Yanmin Si; Jiayue Xu; Xiaoshuang Wang; Yanni Ma; Shuyang Yu; Dongling Zou; Jing Jin; Fang Wang; Jia Yu
Journal:  Nat Cell Biol       Date:  2022-08-04       Impact factor: 28.213

5.  Enhancer RNA m6A methylation facilitates transcriptional condensate formation and gene activation.

Authors:  Joo-Hyung Lee; Ruoyu Wang; Feng Xiong; Joanna Krakowiak; Zian Liao; Phuoc T Nguyen; Elena V Moroz-Omori; Jiaofang Shao; Xiaoyu Zhu; Michael J Bolt; Haoyi Wu; Pankaj K Singh; Mingjun Bi; Caleb J Shi; Naadir Jamal; Guojie Li; Ragini Mistry; Sung Yun Jung; Kuang-Lei Tsai; Josephine C Ferreon; Fabio Stossi; Amedeo Caflisch; Zhijie Liu; Michael A Mancini; Wenbo Li
Journal:  Mol Cell       Date:  2021-08-09       Impact factor: 19.328

6.  Nuclear m6A reader YTHDC1 regulates the scaffold function of LINE1 RNA in mouse ESCs and early embryos.

Authors:  Chuan Chen; Wenqiang Liu; Jiayin Guo; Yuanyuan Liu; Xuelian Liu; Jun Liu; Xiaoyang Dou; Rongrong Le; Yixin Huang; Chong Li; Lingyue Yang; Xiaochen Kou; Yanhong Zhao; You Wu; Jiayu Chen; Hong Wang; Bin Shen; Yawei Gao; Shaorong Gao
Journal:  Protein Cell       Date:  2021-04-22       Impact factor: 14.870

7.  m6A RNA methylation of major satellite repeat transcripts facilitates chromatin association and RNA:DNA hybrid formation in mouse heterochromatin.

Authors:  Katarzyna J Duda; Reagan W Ching; Lisa Jerabek; Nicholas Shukeir; Galina Erikson; Bettina Engist; Megumi Onishi-Seebacher; Valentina Perrera; Florian Richter; Gerhard Mittler; Katharina Fritz; Mark Helm; Philip Knuckles; Marc Bühler; Thomas Jenuwein
Journal:  Nucleic Acids Res       Date:  2021-06-04       Impact factor: 16.971

8.  TET2 Inhibits PD-L1 Gene Expression in Breast Cancer Cells through Histone Deacetylation.

Authors:  Yinghui Shen; Lu Liu; Mengyuan Wang; Bo Xu; Ruitu Lyu; Yujiang Geno Shi; Li Tan
Journal:  Cancers (Basel)       Date:  2021-05-04       Impact factor: 6.639

9.  RNA m6A modification orchestrates a LINE-1-host interaction that facilitates retrotransposition and contributes to long gene vulnerability.

Authors:  Feng Xiong; Ruoyu Wang; Joo-Hyung Lee; Shenglan Li; Shin-Fu Chen; Zian Liao; Lana Al Hasani; Phuoc T Nguyen; Xiaoyu Zhu; Joanna Krakowiak; Dung-Fang Lee; Leng Han; Kuang-Lei Tsai; Ying Liu; Wenbo Li
Journal:  Cell Res       Date:  2021-06-09       Impact factor: 46.297

10.  N6-Methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation.

Authors:  Yuanming Cheng; Wei Xie; Brian F Pickering; Karen L Chu; Angela M Savino; Xuejing Yang; Hanzhi Luo; Diu Tt Nguyen; Shanlan Mo; Ersilia Barin; Anthony Velleca; Thomas M Rohwetter; Dinshaw J Patel; Samie R Jaffrey; Michael G Kharas
Journal:  Cancer Cell       Date:  2021-05-27       Impact factor: 38.585

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