Literature DB >> 33504068

Genetically Encoded Biosensors Based on Fluorescent Proteins.

Hyunbin Kim1,2, Jeongmin Ju1,2, Hae Nim Lee1,3, Hyeyeon Chun1, Jihye Seong1,2,3.   

Abstract

Genetically encoded biosensors based on fluorescent proteins (FPs) allow for the real-time monitoring of molecular dynamics in space and time, which are crucial for the proper functioning and regulation of complex cellular processes. Depending on the types of molecular events to be monitored, different sensing strategies need to be applied for the best design of FP-based biosensors. Here, we review genetically encoded biosensors based on FPs with various sensing strategies, for example, translocation, fluorescence resonance energy transfer (FRET), reconstitution of split FP, pH sensitivity, maturation speed, and so on. We introduce general principles of each sensing strategy and discuss critical factors to be considered if available, then provide representative examples of these FP-based biosensors. These will help in designing the best sensing strategy for the successful development of new genetically encoded biosensors based on FPs.

Entities:  

Keywords:  BiFC; FRET; circular permutation; ddFP; fluorescent protein; fluorescent timer; genetically encoded biosensor; split FP

Mesh:

Substances:

Year:  2021        PMID: 33504068      PMCID: PMC7865379          DOI: 10.3390/s21030795

Source DB:  PubMed          Journal:  Sensors (Basel)        ISSN: 1424-8220            Impact factor:   3.576


  134 in total

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4.  Evidence that the tandem-pleckstrin-homology-domain-containing protein TAPP1 interacts with Ptd(3,4)P2 and the multi-PDZ-domain-containing protein MUPP1 in vivo.

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Journal:  Biochem J       Date:  2002-02-01       Impact factor: 3.857

Review 5.  α-Synuclein pathology in Parkinson's disease and related α-synucleinopathies.

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Journal:  Neurosci Lett       Date:  2019-06-03       Impact factor: 3.046

Review 6.  Bimolecular fluorescence complementation (BiFC) analysis as a probe of protein interactions in living cells.

Authors:  Tom K Kerppola
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

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Authors:  Bryce T Bajar; Emily S Wang; Shu Zhang; Michael Z Lin; Jun Chu
Journal:  Sensors (Basel)       Date:  2016-09-14       Impact factor: 3.576

8.  A genetically encoded single-wavelength sensor for imaging cytosolic and cell surface ATP.

Authors:  Mark A Lobas; Rongkun Tao; Jun Nagai; Mira T Kronschläger; Philip M Borden; Jonathan S Marvin; Loren L Looger; Baljit S Khakh
Journal:  Nat Commun       Date:  2019-02-12       Impact factor: 14.919

9.  Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice.

Authors:  Vincent Villette; Mariya Chavarha; Ivan K Dimov; Jonathan Bradley; Lagnajeet Pradhan; Benjamin Mathieu; Stephen W Evans; Simon Chamberland; Dongqing Shi; Renzhi Yang; Benjamin B Kim; Annick Ayon; Abdelali Jalil; François St-Pierre; Mark J Schnitzer; Guoqiang Bi; Katalin Toth; Jun Ding; Stéphane Dieudonné; Michael Z Lin
Journal:  Cell       Date:  2019-12-12       Impact factor: 41.582

10.  Next-generation GRAB sensors for monitoring dopaminergic activity in vivo.

Authors:  Fangmiao Sun; Jingheng Zhou; Bing Dai; Tongrui Qian; Jianzhi Zeng; Xuelin Li; Yizhou Zhuo; Yajun Zhang; Yipan Wang; Cheng Qian; Ke Tan; Jiesi Feng; Hui Dong; Dayu Lin; Guohong Cui; Yulong Li
Journal:  Nat Methods       Date:  2020-10-21       Impact factor: 28.547

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  4 in total

Review 1.  Resource for FRET-Based Biosensor Optimization.

Authors:  Heonsu Kim; Gyuho Choi; Myung Eun Suk; Tae-Jin Kim
Journal:  Front Cell Dev Biol       Date:  2022-06-20

2.  Immobilization of Recombinant Fluorescent Biosensors Permits Imaging of Extracellular Ion Signals.

Authors:  Sandra Burgstaller; Helmut Bischof; Thomas Rauter; Tony Schmidt; Rainer Schindl; Silke Patz; Bernhard Groschup; Severin Filser; Lucas van den Boom; Philipp Sasse; Robert Lukowski; Nikolaus Plesnila; Wolfgang F Graier; Roland Malli
Journal:  ACS Sens       Date:  2021-11-09       Impact factor: 7.711

3.  Protein sensors combining both on-and-off model for antibody homogeneous assay.

Authors:  Jie Li; Jin-Lan Wang; Wen-Lu Zhang; Zeng Tu; Xue-Fei Cai; Yu-Wei Wang; Chun-Yang Gan; Hai-Jun Deng; Jing Cui; Zhao-Che Shu; Quan-Xin Long; Juan Chen; Ni Tang; Xue Hu; Ai-Long Huang; Jie-Li Hu
Journal:  Biosens Bioelectron       Date:  2022-03-31       Impact factor: 12.545

Review 4.  Genetically encoded fluorescent biosensors for GPCR research.

Authors:  Hyunbin Kim; In-Yeop Baek; Jihye Seong
Journal:  Front Cell Dev Biol       Date:  2022-09-29
  4 in total

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