Literature DB >> 33503951

Genome Analysis of Sable Fur Color Links a Lightened Pigmentation Phenotype to a Frameshift Variant in the Tyrosinase-Related Protein 1 Gene.

Andrey D Manakhov1,2,3, Maria Y Mintseva1, Tatiana V Andreeva1,2, Pavel A Filimonov4, Alexey A Onokhov4, Irina Е Chernova5, Sergey N Kashtanov4, Evgeny I Rogaev1,2,3,6.   

Abstract

Sable (Martes zibellina) is one of the most valuable species of fur animals. Wild-type sable fur color varies from sandy-yellow to black. Farm breeding and 90 years of directional selection have resulted in a generation of several sable breeds with a completely black coat color. In 2005, an unusually chocolate (pastel) puppy was born in the Puschkinsky State Fur Farm (Russia). We established that the pastel phenotype was inherited as a Mendelian autosomal recessive trait. We performed whole-genome sequencing of the sables with pastel fur color and identified a frameshift variant in the gene encoding membrane-bound tyrosinase-like enzyme (TYRP1). TYRP1 is involved in the stability of the tyrosinase enzyme and participates in the synthesis of eumelanin. These data represent the first reported variant linked to fur color in sables and reveal the molecular genetic basis for pastel color pigmentation. These data are also useful for tracking economically valuable fur traits in sable breeding programs.

Entities:  

Keywords:  Martes zibellina; Sable; TYRP1; coat color; pastel

Mesh:

Substances:

Year:  2021        PMID: 33503951      PMCID: PMC7911072          DOI: 10.3390/genes12020157

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  13 in total

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Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

3.  A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.

Authors:  Pablo Cingolani; Adrian Platts; Le Lily Wang; Melissa Coon; Tung Nguyen; Luan Wang; Susan J Land; Xiangyi Lu; Douglas M Ruden
Journal:  Fly (Austin)       Date:  2012 Apr-Jun       Impact factor: 2.160

Review 4.  [Breeding of the Russian sable: Stages of industrial domestication and genetic variability].

Authors:  S N Kashtanov; G E Sulimova; V L Shevyrkov; G R Svishcheva
Journal:  Genetika       Date:  2016-09

5.  The molecular basis of brown, an old mouse mutation, and of an induced revertant to wild type.

Authors:  E Zdarsky; J Favor; I J Jackson
Journal:  Genetics       Date:  1990-10       Impact factor: 4.562

6.  Tyrosinase stabilization by Tyrp1 (the brown locus protein).

Authors:  T Kobayashi; G Imokawa; D C Bennett; V J Hearing
Journal:  J Biol Chem       Date:  1998-11-27       Impact factor: 5.157

7.  Evidence suggesting digenic inheritance of Waardenburg syndrome type II with ocular albinism.

Authors:  Pei-Wen Chiang; Elaine Spector; Tracy L McGregor
Journal:  Am J Med Genet A       Date:  2009-12       Impact factor: 2.802

8.  AdapterRemoval v2: rapid adapter trimming, identification, and read merging.

Authors:  Mikkel Schubert; Stinus Lindgreen; Ludovic Orlando
Journal:  BMC Res Notes       Date:  2016-02-12

9.  Structure of Human Tyrosinase Related Protein 1 Reveals a Binuclear Zinc Active Site Important for Melanogenesis.

Authors:  Xuelei Lai; Harry J Wichers; Montserrat Soler-Lopez; Bauke W Dijkstra
Journal:  Angew Chem Int Ed Engl       Date:  2017-07-17       Impact factor: 15.336

10.  Genome analysis of American minks reveals link of mutations in Ras-related protein-38 gene to Moyle brown coat phenotype.

Authors:  Andrey D Manakhov; Maria Yu Mintseva; Igor A Andreev; Lev I Uralsky; Tatiana V Andreeva; Oleg V Trapezov; Evgeny I Rogaev
Journal:  Sci Rep       Date:  2020-09-28       Impact factor: 4.379

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