Literature DB >> 33503035

Comprehensive analysis of PLOD family members in low-grade gliomas using bioinformatics methods.

Yonghui Zhao1, Xiang Zhang1, Junchao Yao1.   

Abstract

Low-grade gliomas (LGGs) is a primary invasive brain tumor that grows slowly but is incurable and eventually develops into high malignant glioma. Novel biomarkers for the tumorigenesis and lifetime of LGG are critically demanded to be investigated. In this study, the expression levels of procollagen-lysine, 2-oxoglutarate 5-dioxygenases (PLODs) were analyzed by ONCOMINE, HPA and GEPIA. The GEPIA online platform was applied to evaluate the interrelation between PLODs and survival index in LGG. Furthermore, functions of PLODs and co-expression genes were inspected by the DAVID. Moreover, we used TIMER, cBioportal, GeneMINIA and NetworkAnalyst analysis to reveal the mechanism of PLODs in LGG. We found that expression levels of each PLOD family members were up-regulated in patients with LGG. Higher expression of PLODs was closely related to shorter disease-free survival (DFS) and overall survival (OS). The findings showed that LGG cases with or without alterations were significantly correlated with the OS and DFS. The mechanism of PLODs in LGG may be involved in response to hypoxia, oxidoreductase activity, Lysine degradation and immune cell infiltration. In general, this research has investigated the values of PLODs in LGG, which could serve as biomarkers for diagnosis, prognosis and potential therapeutic targets of LGG patients.

Entities:  

Year:  2021        PMID: 33503035      PMCID: PMC7840023          DOI: 10.1371/journal.pone.0246097

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  48 in total

1.  Lysyl hydroxylase 3 is a multifunctional protein possessing collagen glucosyltransferase activity.

Authors:  J Heikkinen; M Risteli; C Wang; J Latvala; M Rossi; M Valtavaara; R Myllylä
Journal:  J Biol Chem       Date:  2000-11-17       Impact factor: 5.157

2.  EGFRvIII-CAR-T Cells with PD-1 Knockout Have Improved Anti-Glioma Activity.

Authors:  Haifeng Zhu; Yongping You; Zhouming Shen; Lei Shi
Journal:  Pathol Oncol Res       Date:  2020-01-27       Impact factor: 3.201

3.  Collagen Accumulation in Osteosarcoma Cells lacking GLT25D1 Collagen Galactosyltransferase.

Authors:  Stephan Baumann; Thierry Hennet
Journal:  J Biol Chem       Date:  2016-07-11       Impact factor: 5.157

4.  PLOD3 is Upregulated in Gastric Cancer and Correlated with Clinicopathologic Characteristics.

Authors:  Biao Wang; Lingyan Xu; Yugang Ge; Xiaomin Cai; Qiang Li; Zhengyi Yu; Jiawei Wang; Ying Wang; Chao Lu; Danping Wang; Yuanyuan Wang; Xiaofeng Chen; Yanhong Gu
Journal:  Clin Lab       Date:  2019-01-01       Impact factor: 1.138

5.  Tumour necrosis factor alpha enhances the expression of hydroxyl lyase, cytoplasmic antiproteinase-2 and a dual specificity kinase TTK in human chondrocyte-like cells.

Authors:  H Ah-Kim; X Zhang; S Islam; J I Sofi; Y Glickberg; C J Malemud; R W Moskowitz; T M Haqqi
Journal:  Cytokine       Date:  2000-02       Impact factor: 3.861

6.  The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.

Authors:  David Warde-Farley; Sylva L Donaldson; Ovi Comes; Khalid Zuberi; Rashad Badrawi; Pauline Chao; Max Franz; Chris Grouios; Farzana Kazi; Christian Tannus Lopes; Anson Maitland; Sara Mostafavi; Jason Montojo; Quentin Shao; George Wright; Gary D Bader; Quaid Morris
Journal:  Nucleic Acids Res       Date:  2010-07       Impact factor: 16.971

7.  Premature aggregation of type IV collagen and early lethality in lysyl hydroxylase 3 null mice.

Authors:  Kati Rautavuoma; Kati Takaluoma; Raija Sormunen; Johanna Myllyharju; Kari I Kivirikko; Raija Soininen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-17       Impact factor: 11.205

Review 8.  [DIFFUSE LOW GRADE GLIOMA: PERSONALIZED ADAPTATION OF SURGICAL RESECTION IN AN ERA OF TARGETED ONCOLOGICAL THERAPY].

Authors:  Yosef Laviv
Journal:  Harefuah       Date:  2019-09

9.  Hypoxia-induced PLOD2 promotes proliferation, migration and invasion via PI3K/Akt signaling in glioma.

Authors:  Ye Song; Shihao Zheng; Jizhou Wang; Hao Long; Luxiong Fang; Gang Wang; Zhiyong Li; Tianshi Que; Yi Liu; Yilei Li; Xi'an Zhang; Weiyi Fang; Songtao Qi
Journal:  Oncotarget       Date:  2017-06-27

Review 10.  Roles of PLODs in Collagen Synthesis and Cancer Progression.

Authors:  Yifei Qi; Ren Xu
Journal:  Front Cell Dev Biol       Date:  2018-06-28
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  2 in total

1.  Clinical Prognostic Value of the PLOD Gene Family in Lung Adenocarcinoma.

Authors:  Yiming Meng; Jing Sun; Guirong Zhang; Tao Yu; Haozhe Piao
Journal:  Front Mol Biosci       Date:  2022-02-21

2.  A Fe2+-dependent self-inhibited state influences the druggability of human collagen lysyl hydroxylase (LH/PLOD) enzymes.

Authors:  Luigi Scietti; Elisabetta Moroni; Daiana Mattoteia; Marco Fumagalli; Matteo De Marco; Lisa Negro; Antonella Chiapparino; Stefano A Serapian; Francesca De Giorgi; Silvia Faravelli; Giorgio Colombo; Federico Forneris
Journal:  Front Mol Biosci       Date:  2022-08-25
  2 in total

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