Literature DB >> 33503024

Sensor-based localization of epidemic sources on human mobility networks.

Jun Li1, Juliane Manitz1, Enrico Bertuzzo2, Eric D Kolaczyk1.   

Abstract

We investigate the source detection problem in epidemiology, which is one of the most important issues for control of epidemics. Mathematically, we reformulate the problem as one of identifying the relevant component in a multivariate Gaussian mixture model. Focusing on the study of cholera and diseases with similar modes of transmission, we calibrate the parameters of our mixture model using human mobility networks within a stochastic, spatially explicit epidemiological model for waterborne disease. Furthermore, we adopt a Bayesian perspective, so that prior information on source location can be incorporated (e.g., reflecting the impact of local conditions). Posterior-based inference is performed, which permits estimates in the form of either individual locations or regions. Importantly, our estimator only requires first-arrival times of the epidemic by putative observers, typically located only at a small proportion of nodes. The proposed method is demonstrated within the context of the 2000-2002 cholera outbreak in the KwaZulu-Natal province of South Africa.

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Mesh:

Year:  2021        PMID: 33503024      PMCID: PMC7870066          DOI: 10.1371/journal.pcbi.1008545

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  21 in total

1.  Modelling cholera epidemics: the role of waterways, human mobility and sanitation.

Authors:  L Mari; E Bertuzzo; L Righetto; R Casagrandi; M Gatto; I Rodriguez-Iturbe; A Rinaldo
Journal:  J R Soc Interface       Date:  2011-07-13       Impact factor: 4.118

2.  The role of the airline transportation network in the prediction and predictability of global epidemics.

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-03       Impact factor: 11.205

3.  Spatially explicit conditions for waterborne pathogen invasion.

Authors:  Marino Gatto; Lorenzo Mari; Enrico Bertuzzo; Renato Casagrandi; Lorenzo Righetto; Ignacio Rodriguez-Iturbe; Andrea Rinaldo
Journal:  Am Nat       Date:  2013-07-18       Impact factor: 3.926

4.  Vaccination strategies for epidemic cholera in Haiti with implications for the developing world.

Authors:  Dennis L Chao; M Elizabeth Halloran; Ira M Longini
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

5.  Locating the source of large-scale outbreaks of foodborne disease.

Authors:  Abigail L Horn; Hanno Friedrich
Journal:  J R Soc Interface       Date:  2019-02-28       Impact factor: 4.118

6.  Inferring the origin of an epidemic with a dynamic message-passing algorithm.

Authors:  Andrey Y Lokhov; Marc Mézard; Hiroki Ohta; Lenka Zdeborová
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-07-01

7.  Bayesian inference of epidemics on networks via belief propagation.

Authors:  Fabrizio Altarelli; Alfredo Braunstein; Luca Dall'Asta; Alejandro Lage-Castellanos; Riccardo Zecchina
Journal:  Phys Rev Lett       Date:  2014-03-17       Impact factor: 9.161

8.  Identification of Patient Zero in Static and Temporal Networks: Robustness and Limitations.

Authors:  Nino Antulov-Fantulin; Alen Lančić; Tomislav Šmuc; Hrvoje Štefančić; Mile Šikić
Journal:  Phys Rev Lett       Date:  2015-06-16       Impact factor: 9.161

9.  Generalized reproduction numbers and the prediction of patterns in waterborne disease.

Authors:  Marino Gatto; Lorenzo Mari; Enrico Bertuzzo; Renato Casagrandi; Lorenzo Righetto; Ignacio Rodriguez-Iturbe; Andrea Rinaldo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-12       Impact factor: 11.205

10.  Pandemic potential of a strain of influenza A (H1N1): early findings.

Authors:  Christophe Fraser; Christl A Donnelly; Simon Cauchemez; William P Hanage; Maria D Van Kerkhove; T Déirdre Hollingsworth; Jamie Griffin; Rebecca F Baggaley; Helen E Jenkins; Emily J Lyons; Thibaut Jombart; Wes R Hinsley; Nicholas C Grassly; Francois Balloux; Azra C Ghani; Neil M Ferguson; Andrew Rambaut; Oliver G Pybus; Hugo Lopez-Gatell; Celia M Alpuche-Aranda; Ietza Bojorquez Chapela; Ethel Palacios Zavala; Dulce Ma Espejo Guevara; Francesco Checchi; Erika Garcia; Stephane Hugonnet; Cathy Roth
Journal:  Science       Date:  2009-05-11       Impact factor: 47.728

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