Literature DB >> 33500003

Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh the response to diet supplementation with macroalgae.

C Keating1,2, M Bolton-Warberg3, J Hinchcliffe4, R Davies5, S Whelan3, A H L Wan6,7, R D Fitzgerald3, S J Davies8, U Z Ijaz9, C J Smith10,11.   

Abstract

BACKGROUND: Aquaculture successfully meets global food demands for many fish species. However, aquaculture production of Atlantic cod (Gadus morhua) is just 2.5% of total market production. For cod farming to be a viable economic venture specific challenges on how to increase growth, health and farming productivity need to be addressed. Feed ingredients play a key role here. Macroalgae (seaweeds) have been suggested as a functional feed supplement with both health and economic benefits for terrestrial farmed animals and fish. The impact of such dietary supplements to cod gut integrity and microbiota, which contribute to overall fish robustness is unknown. The objective of this study was to supplement the diet of juvenile Atlantic cod with macroalgae and determine the impacts on fish condition and growth, gut morphology and hindgut microbiota composition (16S rRNA amplicon sequencing). Fish were fed one of three diets: control (no macroalgal inclusion), 10% inclusion of either egg wrack (Ascophyllum nodosum) or sea lettuce (Ulva rigida) macroalgae in a 12-week trial.
RESULTS: The results demonstrated there was no significant difference in fish condition, gut morphology or hindgut microbiota between the U. rigida supplemented fish group and the control group at any time-point. This trend was not observed with the A. nodosum treatment. Fish within this group were further categorised as either 'Normal' or 'Lower Growth'. 'Lower Growth' individuals found the diet unpalatable resulting in reduced weight and condition factor combined with an altered gut morphology and microbiome relative to the other treatments. Excluding this group, our results show that the hindgut microbiota was largely driven by temporal pressures with the microbial communities becoming more similar over time irrespective of dietary treatment. The core microbiome at the final time-point consisted of the orders Vibrionales (Vibrio and Photobacterium), Bacteroidales (Bacteroidetes and Macellibacteroides) and Clostridiales (Lachnoclostridium).
CONCLUSIONS: Our study indicates that U. rigida macroalgae can be supplemented at 10% inclusion levels in the diet of juvenile farmed Atlantic cod without any impact on fish condition or hindgut microbial community structure. We also conclude that 10% dietary inclusion of A. nodosum is not a suitable feed supplement in a farmed cod diet.

Entities:  

Keywords:  16S rRNA amplicon sequencing7; Aquaculture8; Ascophyllum nodosum 6; Atlantic cod1; Hindgut microbiome2; Macroalgae4; Seaweed3; Ulva rigida 5

Year:  2021        PMID: 33500003      PMCID: PMC7934267          DOI: 10.1186/s42523-020-00065-1

Source DB:  PubMed          Journal:  Anim Microbiome        ISSN: 2524-4671


  59 in total

1.  Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition.

Authors:  R I Griffiths; A S Whiteley; A G O'Donnell; M J Bailey
Journal:  Appl Environ Microbiol       Date:  2000-12       Impact factor: 4.792

2.  Phylogenetic analysis of intestinal microflora indicates a novel Mycoplasma phylotype in farmed and wild salmon.

Authors:  Wiliam E Holben; Paul Williams; Michael A Gilbert; Markku Saarinen; Laura K Särkilahti; Juha H A Apajalahti
Journal:  Microb Ecol       Date:  2002-06-26       Impact factor: 4.552

3.  FastTree 2--approximately maximum-likelihood trees for large alignments.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  PLoS One       Date:  2010-03-10       Impact factor: 3.240

Review 4.  Heterologous protein secretion by bacillus species from the cradle to the grave.

Authors:  Susanne Pohl; Colin R Harwood
Journal:  Adv Appl Microbiol       Date:  2010       Impact factor: 5.086

5.  Genome wide identification of taste receptor genes in common carp (Cyprinus carpio) and phylogenetic analysis in teleost.

Authors:  Shengnan Kong; Chuanju Dong; Hongzao Lv; Lin Chen; Jiangfan Zhang; Fei Pu; Xuejun Li; Peng Xu
Journal:  Gene       Date:  2018-08-02       Impact factor: 3.688

6.  Changes in gut microbiota in rats fed a high fat diet correlate with obesity-associated metabolic parameters.

Authors:  Virginie Lecomte; Nadeem O Kaakoush; Christopher A Maloney; Mukesh Raipuria; Karina D Huinao; Hazel M Mitchell; Margaret J Morris
Journal:  PLoS One       Date:  2015-05-18       Impact factor: 3.240

7.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Authors:  Michael I Love; Wolfgang Huber; Simon Anders
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

8.  Interpopulation Variation in the Atlantic Salmon Microbiome Reflects Environmental and Genetic Diversity.

Authors:  Tamsyn M Uren Webster; Sofia Consuegra; Matthew Hitchings; Carlos Garcia de Leaniz
Journal:  Appl Environ Microbiol       Date:  2018-08-01       Impact factor: 4.792

9.  phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.

Authors:  Paul J McMurdie; Susan Holmes
Journal:  PLoS One       Date:  2013-04-22       Impact factor: 3.240

10.  Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis.

Authors:  Tongtong Li; Meng Long; Cheng Ji; Zhixin Shen; François-Joël Gatesoupe; Xujie Zhang; Qianqian Zhang; Lanli Zhang; Yuanli Zhao; Xinhua Liu; Aihua Li
Journal:  Sci Rep       Date:  2016-07-28       Impact factor: 4.379

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  2 in total

1.  Drivers of ecological assembly in the hindgut of Atlantic Cod fed a macroalgal supplemented diet.

Authors:  C Keating; M Bolton-Warberg; J Hinchcliffe; R Davies; S Whelan; A H L Wan; R D Fitzgerald; S J Davies; C J Smith; U Z Ijaz
Journal:  NPJ Biofilms Microbiomes       Date:  2022-05-04       Impact factor: 8.462

Review 2.  Alternative Proteins for Fish Diets: Implications beyond Growth.

Authors:  Cláudia Aragão; Ana Teresa Gonçalves; Benjamín Costas; Rita Azeredo; Maria João Xavier; Sofia Engrola
Journal:  Animals (Basel)       Date:  2022-05-07       Impact factor: 3.231

  2 in total

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