Literature DB >> 33498168

Molecular Mechanisms of DUBs Regulation in Signaling and Disease.

Ying Li1, David Reverter1.   

Abstract

The large family of deubiquitinating enzymes (DUBs) are involved in the regulation of a plethora of processes carried out inside the cell by protein ubiquitination. Ubiquitination is a basic pathway responsible for the correct protein homeostasis in the cell, which could regulate the fate of proteins through the ubiquitin-proteasome system (UPS). In this review we will focus on recent advances on the molecular mechanisms and specificities found for some types of DUBs enzymes, highlighting illustrative examples in which the regulatory mechanism for DUBs has been understood in depth at the molecular level by structural biology. DUB proteases are responsible for cleavage and regulation of the multiple types of ubiquitin linkages that can be synthesized inside the cell, known as the ubiquitin-code, which are tightly connected to specific substrate functions. We will display some strategies carried out by members of different DUB families to provide specificity on the cleavage of particular ubiquitin linkages. Finally, we will also discuss recent progress made for the development of drug compounds targeting DUB proteases, which are usually correlated to the progress of many pathologies such as cancer and neurodegenerative diseases.

Entities:  

Keywords:  DUBs; UPS; USPs; deubiquitinating enzymes; proteasome; protein degradation; structural analysis; ubiquitin; ubiquitin-code

Mesh:

Substances:

Year:  2021        PMID: 33498168      PMCID: PMC7863924          DOI: 10.3390/ijms22030986

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  199 in total

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Authors:  Yusuke Sato; Eiji Goto; Yuri Shibata; Yuji Kubota; Atsushi Yamagata; Sakurako Goto-Ito; Keiko Kubota; Jun-ichiro Inoue; Mutsuhiro Takekawa; Fuminori Tokunaga; Shuya Fukai
Journal:  Nat Struct Mol Biol       Date:  2015-02-16       Impact factor: 15.369

2.  USP14 inhibitors as potential anticancer agents.

Authors:  Stina Lundgren; Ewa Odrzywol
Journal:  Future Med Chem       Date:  2018-08-01       Impact factor: 3.808

Review 3.  Linear ubiquitin chain-binding domains.

Authors:  Lilian M Fennell; Simin Rahighi; Fumiyo Ikeda
Journal:  FEBS J       Date:  2018-04-30       Impact factor: 5.542

4.  Regulation of Oral Squamous Cell Carcinoma Proliferation Through Crosstalk Between SMAD7 and CYLD.

Authors:  Wei-Li Ge; Jun-Feng Xu; Jun Hu
Journal:  Cell Physiol Biochem       Date:  2016-03-17

5.  Association of C-terminal ubiquitin hydrolase BRCA1-associated protein 1 with cell cycle regulator host cell factor 1.

Authors:  Shahram Misaghi; Søren Ottosen; Anita Izrael-Tomasevic; David Arnott; Mohamed Lamkanfi; James Lee; Jinfeng Liu; Karen O'Rourke; Vishva M Dixit; Angus C Wilson
Journal:  Mol Cell Biol       Date:  2009-02-02       Impact factor: 4.272

6.  Inactivation of the CYLD deubiquitinase by HPV E6 mediates hypoxia-induced NF-kappaB activation.

Authors:  Jiabin An; Deqiong Mo; Huiren Liu; Mysore S Veena; Eri S Srivatsan; Ramin Massoumi; Matthew B Rettig
Journal:  Cancer Cell       Date:  2008-11-04       Impact factor: 31.743

7.  Cryo-EM Reveals Unanchored M1-Ubiquitin Chain Binding at hRpn11 of the 26S Proteasome.

Authors:  Xiang Chen; Zachary Dorris; Dan Shi; Rick K Huang; Htet Khant; Tara Fox; Natalia de Val; Dewight Williams; Ping Zhang; Kylie J Walters
Journal:  Structure       Date:  2020-08-11       Impact factor: 5.006

8.  Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde.

Authors:  Min Hu; Pingwei Li; Muyang Li; Wenyu Li; Tingting Yao; Jia-Wei Wu; Wei Gu; Robert E Cohen; Yigong Shi
Journal:  Cell       Date:  2002-12-27       Impact factor: 41.582

9.  Casein kinase 2 (CK2) phosphorylates the deubiquitylase OTUB1 at Ser16 to trigger its nuclear localization.

Authors:  Lina Herhaus; Ana B Perez-Oliva; Giorgio Cozza; Robert Gourlay; Simone Weidlich; David G Campbell; Lorenzo A Pinna; Gopal P Sapkota
Journal:  Sci Signal       Date:  2015-04-14       Impact factor: 8.192

10.  Downregulation of Ubiquitin-Specific Protease 22 Inhibits Proliferation, Invasion, and Epithelial-Mesenchymal Transition in Osteosarcoma Cells.

Authors:  Dengfeng Zhang; Feng Jiang; Xiao Wang; Guojun Li
Journal:  Oncol Res       Date:  2016-10-27       Impact factor: 5.574

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  9 in total

1.  Comprehensive Analysis Reveals USP45 as a Novel Putative Oncogene in Pan-Cancer.

Authors:  Kai Li; Qian Wang; Hua Bian; Zhiguo Chen; Haifa He; Xulin Zhao; Pengju Gong
Journal:  Front Mol Biosci       Date:  2022-06-28

Review 2.  Modulation of Ubiquitin Signaling in Innate Immune Response by Herpesviruses.

Authors:  Sandrine-M Soh; Yeong-Jun Kim; Hong-Hee Kim; Hye-Ra Lee
Journal:  Int J Mol Sci       Date:  2022-01-01       Impact factor: 5.923

Review 3.  Ubiquitin-specific proteases in inflammatory bowel disease-related signalling pathway regulation.

Authors:  Rirong Chen; Xiaobai Pang; Li Li; Zhirong Zeng; Minhu Chen; Shenghong Zhang
Journal:  Cell Death Dis       Date:  2022-02-10       Impact factor: 9.685

4.  Hypoxia-induced proteasomal degradation of DBC1 by SIAH2 in breast cancer progression.

Authors:  Qiangqiang Liu; Qian Luo; Jianyu Feng; Yanping Zhao; Biao Ma; Hongcheng Cheng; Tian Zhao; Hong Lei; Chenglong Mu; Linbo Chen; Yuanyuan Meng; Jiaojiao Zhang; Yijia Long; Jingyi Su; Guo Chen; Yanjun Li; Gang Hu; Xudong Liao; Quan Chen; Yushan Zhu
Journal:  Elife       Date:  2022-08-01       Impact factor: 8.713

5.  A Regulatory Network Analysis of the Importance of USP15 in Breast Cancer Metastasis and Prognosis.

Authors:  Jun Ling; Chenhui Qin; Tao Li; Baozhen Wang; Weiji Cai; Lei Ma; Yanfeng Wang; Jing Chen; Fang Xu
Journal:  J Oncol       Date:  2022-09-29       Impact factor: 4.501

6.  Ubiquitin Specific Protease 29 Functions as an Oncogene Promoting Tumorigenesis in Colorectal Carcinoma.

Authors:  Arun Pandian Chandrasekaran; Bharathi Suresh; Neha Sarodaya; Na-Re Ko; Seung-Jun Oh; Kye-Seong Kim; Suresh Ramakrishna
Journal:  Cancers (Basel)       Date:  2021-05-31       Impact factor: 6.639

Review 7.  Post-Translational Modifications of Deubiquitinating Enzymes: Expanding the Ubiquitin Code.

Authors:  Yanfeng Wang; Feng Wang
Journal:  Front Pharmacol       Date:  2021-06-10       Impact factor: 5.810

Review 8.  HAUSP Is a Key Epigenetic Regulator of the Chromatin Effector Proteins.

Authors:  Omeima Abdullah; Mahmoud Alhosin
Journal:  Genes (Basel)       Date:  2021-12-24       Impact factor: 4.096

Review 9.  The Role of E3 Ubiquitin Ligases and Deubiquitinases in Inflammatory Bowel Disease: Friend or Foe?

Authors:  Min Zou; Qi-Shan Zeng; Jiao Nie; Jia-Hui Yang; Zhen-Yi Luo; Hua-Tian Gan
Journal:  Front Immunol       Date:  2021-12-08       Impact factor: 7.561

  9 in total

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