Literature DB >> 33496249

Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020.

Ingra Morales Claro, Flavia Cristina da Silva Sales, Mariana Severo Ramundo, Darlan S Candido, Camila A M Silva, Jaqueline Goes de Jesus, Erika R Manuli, Cristina Mendes de Oliveira, Luciano Scarpelli, Gustavo Campana, Oliver G Pybus, Ester Cerdeira Sabino, Nuno Rodrigues Faria, José Eduardo Levi.   

Abstract

In December 2020, research surveillance detected the B.1.1.7 lineage of severe acute respiratory syndrome coronavirus 2 in São Paulo, Brazil. Rapid genomic sequencing and phylogenetic analysis revealed 2 distinct introductions of the lineage. One patient reported no international travel. There may be more infections with this lineage in Brazil than reported.

Entities:  

Keywords:  2019 novel coronavirus disease; Brazil; COVID-19; SARS-CoV-2; coronavirus disease; genomic; lineage B.1.1.7; respiratory infections; severe acute respiratory syndrome coronavirus 2; surveillance; transmission; viruses; zoonoses

Mesh：

Year:  2021        PMID： 33496249      PMCID： PMC7920684          DOI： 10.3201/eid2703.210038

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN： 1080-6040            Impact factor:   16.126


  6 in total

1.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

2.  GISAID: Global initiative on sharing all influenza data - from vision to reality.

Authors:  Yuelong Shu; John McCauley
Journal:  Euro Surveill       Date:  2017-03-30

3.  IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.

Authors:  Bui Quang Minh; Heiko A Schmidt; Olga Chernomor; Dominik Schrempf; Michael D Woodhams; Arndt von Haeseler; Robert Lanfear
Journal:  Mol Biol Evol       Date:  2020-05-01       Impact factor: 16.240

4.  A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.

Authors:  Andrew Rambaut; Edward C Holmes; Áine O'Toole; Verity Hill; John T McCrone; Christopher Ruis; Louis du Plessis; Oliver G Pybus
Journal:  Nat Microbiol       Date:  2020-07-15       Impact factor: 17.745

5.  Evolution and epidemic spread of SARS-CoV-2 in Brazil.

Authors:  Darlan S Candido; Ingra M Claro; Jaqueline G de Jesus; William M Souza; Filipe R R Moreira; Simon Dellicour; Thomas A Mellan; Louis du Plessis; Rafael H M Pereira; Flavia C S Sales; Erika R Manuli; Julien Thézé; Luiz Almeida; Mariane T Menezes; Carolina M Voloch; Marcilio J Fumagalli; Thaís M Coletti; Camila A M da Silva; Mariana S Ramundo; Mariene R Amorim; Henrique H Hoeltgebaum; Swapnil Mishra; Mandev S Gill; Luiz M Carvalho; Lewis F Buss; Carlos A Prete; Jordan Ashworth; Helder I Nakaya; Pedro S Peixoto; Oliver J Brady; Samuel M Nicholls; Amilcar Tanuri; Átila D Rossi; Carlos K V Braga; Alexandra L Gerber; Ana Paula de C Guimarães; Nelson Gaburo; Cecila Salete Alencar; Alessandro C S Ferreira; Cristiano X Lima; José Eduardo Levi; Celso Granato; Giulia M Ferreira; Ronaldo S Francisco; Fabiana Granja; Marcia T Garcia; Maria Luiza Moretti; Mauricio W Perroud; Terezinha M P P Castiñeiras; Carolina S Lazari; Sarah C Hill; Andreza Aruska de Souza Santos; Camila L Simeoni; Julia Forato; Andrei C Sposito; Angelica Z Schreiber; Magnun N N Santos; Camila Zolini de Sá; Renan P Souza; Luciana C Resende-Moreira; Mauro M Teixeira; Josy Hubner; Patricia A F Leme; Rennan G Moreira; Maurício L Nogueira; Neil M Ferguson; Silvia F Costa; José Luiz Proenca-Modena; Ana Tereza R Vasconcelos; Samir Bhatt; Philippe Lemey; Chieh-Hsi Wu; Andrew Rambaut; Nick J Loman; Renato S Aguiar; Oliver G Pybus; Ester C Sabino; Nuno Rodrigues Faria
Journal:  Science       Date:  2020-07-23       Impact factor: 47.728

6.  SalivaDirect: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity.

Authors:  Chantal B F Vogels; Anne E Watkins; Christina A Harden; Doug E Brackney; Jared Shafer; Jianhui Wang; César Caraballo; Chaney C Kalinich; Isabel M Ott; Joseph R Fauver; Eriko Kudo; Peiwen Lu; Arvind Venkataraman; Maria Tokuyama; Adam J Moore; M Catherine Muenker; Arnau Casanovas-Massana; John Fournier; Santos Bermejo; Melissa Campbell; Rupak Datta; Allison Nelson; Charles S Dela Cruz; Albert I Ko; Akiko Iwasaki; Harlan M Krumholz; J D Matheus; Pei Hui; Chen Liu; Shelli F Farhadian; Robby Sikka; Anne L Wyllie; Nathan D Grubaugh
Journal:  Med (N Y)       Date:  2020-12-26
  6 in total
  25 in total

1.  SARS-CoV-2 variants and vaccination.

Authors:  Yang Liu; Jianying Liu; Pei-Yong Shi
Journal:  Zoonoses (Burlingt)       Date:  2022-02-08

Review 2.  Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic.

Authors:  Stephen W Attwood; Sarah C Hill; David M Aanensen; Thomas R Connor; Oliver G Pybus
Journal:  Nat Rev Genet       Date:  2022-04-22       Impact factor: 59.581

3.  Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil.

Authors:  Nuno R Faria; Thomas A Mellan; Charles Whittaker; Ingra M Claro; Darlan da S Candido; Swapnil Mishra; Oliver G Pybus; Seth Flaxman; Samir Bhatt; Ester C Sabino; Myuki A E Crispim; Flavia C S Sales; Iwona Hawryluk; John T McCrone; Ruben J G Hulswit; Lucas A M Franco; Mariana S Ramundo; Jaqueline G de Jesus; Pamela S Andrade; Thais M Coletti; Giulia M Ferreira; Camila A M Silva; Erika R Manuli; Rafael H M Pereira; Pedro S Peixoto; Moritz U G Kraemer; Nelson Gaburo; Cecilia da C Camilo; Henrique Hoeltgebaum; William M Souza; Esmenia C Rocha; Leandro M de Souza; Mariana C de Pinho; Leonardo J T Araujo; Frederico S V Malta; Aline B de Lima; Joice do P Silva; Danielle A G Zauli; Alessandro C de S Ferreira; Ricardo P Schnekenberg; Daniel J Laydon; Patrick G T Walker; Hannah M Schlüter; Ana L P Dos Santos; Maria S Vidal; Valentina S Del Caro; Rosinaldo M F Filho; Helem M Dos Santos; Renato S Aguiar; José L Proença-Modena; Bruce Nelson; James A Hay; Mélodie Monod; Xenia Miscouridou; Helen Coupland; Raphael Sonabend; Michaela Vollmer; Axel Gandy; Carlos A Prete; Vitor H Nascimento; Marc A Suchard; Thomas A Bowden; Sergei L K Pond; Chieh-Hsi Wu; Oliver Ratmann; Neil M Ferguson; Christopher Dye; Nick J Loman; Philippe Lemey; Andrew Rambaut; Nelson A Fraiji; Maria do P S S Carvalho
Journal:  Science       Date:  2021-04-14       Impact factor: 47.728

4.  The N501Y spike substitution enhances SARS-CoV-2 transmission.

Authors:  Yang Liu; Jianying Liu; Kenneth S Plante; Jessica A Plante; Xuping Xie; Xianwen Zhang; Zhiqiang Ku; Zhiqiang An; Dionna Scharton; Craig Schindewolf; Vineet D Menachery; Pei-Yong Shi; Scott C Weaver
Journal:  bioRxiv       Date:  2021-03-09

5.  SARS-CoV-2 variants B.1.351 and P.1 escape from neutralizing antibodies.

Authors:  Markus Hoffmann; Prerna Arora; Rüdiger Groß; Alina Seidel; Bojan F Hörnich; Alexander S Hahn; Nadine Krüger; Luise Graichen; Heike Hofmann-Winkler; Amy Kempf; Martin S Winkler; Sebastian Schulz; Hans-Martin Jäck; Bernd Jahrsdörfer; Hubert Schrezenmeier; Martin Müller; Alexander Kleger; Jan Münch; Stefan Pöhlmann
Journal:  Cell       Date:  2021-03-20       Impact factor: 41.582

Review 6.  An overview of current COVID-19 vaccine platforms.

Authors:  Abdou Nagy; Bader Alhatlani
Journal:  Comput Struct Biotechnol J       Date:  2021-04-27       Impact factor: 7.271

7.  SARS-CoV-2 reinfection caused by the P.1 lineage in Araraquara city, Sao Paulo State, Brazil.

Authors:  Camila Malta Romano; Alvina Clara Felix; Anderson Vicente de Paula; Jaqueline Góes de Jesus; Pamela S Andrade; Darlan Cândido; Franciane M de Oliveira; Andreia C Ribeiro; Francini C da Silva; Marta Inemami; Angela Aparecida Costa; Cibele O D Leal; Walter Manso Figueiredo; Claudio Sergio Pannuti; William M de Souza; Nuno Rodrigues Faria; Ester Cerdeira Sabino
Journal:  Rev Inst Med Trop Sao Paulo       Date:  2021-04-23       Impact factor: 1.846

8.  Inferring the Association between the Risk of COVID-19 Case Fatality and N501Y Substitution in SARS-CoV-2.

Authors:  Shi Zhao; Jingzhi Lou; Marc K C Chong; Lirong Cao; Hong Zheng; Zigui Chen; Renee W Y Chan; Benny C Y Zee; Paul K S Chan; Maggie H Wang
Journal:  Viruses       Date:  2021-04-08       Impact factor: 5.048

9.  Epidemic Spread of SARS-CoV-2 Lineage B.1.1.7 in Brazil.

Authors:  Filipe R R Moreira; Diego M Bonfim; Danielle A G Zauli; Joice P Silva; Aline B Lima; Frederico S V Malta; Alessandro C S Ferreira; Victor C Pardini; Wagner C S Magalhães; Daniel C Queiroz; Rafael M Souza; Victor E V Geddes; Walyson C Costa; Rennan G Moreira; Nuno R Faria; Carolina M Voloch; Renan P Souza; Renato S Aguiar
Journal:  Viruses       Date:  2021-05-26       Impact factor: 5.048

10.  Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil.

Authors:  Nuno R Faria; Thomas A Mellan; Charles Whittaker; Ingra M Claro; Darlan da S Candido; Swapnil Mishra; Myuki A E Crispim; Flavia C Sales; Iwona Hawryluk; John T McCrone; Ruben J G Hulswit; Lucas A M Franco; Mariana S Ramundo; Jaqueline G de Jesus; Pamela S Andrade; Thais M Coletti; Giulia M Ferreira; Camila A M Silva; Erika R Manuli; Rafael H M Pereira; Pedro S Peixoto; Moritz U Kraemer; Nelson Gaburo; Cecilia da C Camilo; Henrique Hoeltgebaum; William M Souza; Esmenia C Rocha; Leandro M de Souza; Mariana C de Pinho; Leonardo J T Araujo; Frederico S V Malta; Aline B de Lima; Joice do P Silva; Danielle A G Zauli; Alessandro C de S Ferreira; Ricardo P Schnekenberg; Daniel J Laydon; Patrick G T Walker; Hannah M Schlüter; Ana L P Dos Santos; Maria S Vidal; Valentina S Del Caro; Rosinaldo M F Filho; Helem M Dos Santos; Renato S Aguiar; José L P Modena; Bruce Nelson; James A Hay; Melodie Monod; Xenia Miscouridou; Helen Coupland; Raphael Sonabend; Michaela Vollmer; Axel Gandy; Marc A Suchard; Thomas A Bowden; Sergei L K Pond; Chieh-Hsi Wu; Oliver Ratmann; Neil M Ferguson; Christopher Dye; Nick J Loman; Philippe Lemey; Andrew Rambaut; Nelson A Fraiji; Maria do P S S Carvalho; Oliver G Pybus; Seth Flaxman; Samir Bhatt; Ester C Sabino
Journal:  medRxiv       Date:  2021-03-03
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