Literature DB >> 33496244

Highly Pathogenic Avian Influenza A(H5N8) Virus Spread by Short- and Long-Range Transmission, France, 2016-17.

François-Xavier Briand, Eric Niqueux, Audrey Schmitz, Claire Martenot, Martine Cherbonnel, Pascale Massin, Florian Kerbrat, Marina Chatel, Carole Guillemoto, Cecile Guillou-Cloarec, Katell Ogor, Aurélie Le Prioux, Chantal Allée, Véronique Beven, Edouard Hirchaud, Yannick Blanchard, Axelle Scoizec, Sophie Le Bouquin, Nicolas Eterradossi, Béatrice Grasland.   

Abstract

We detected 3 genotypes of highly pathogenic avian influenza A(H5N8) virus in France during winter 2016-17. Genotype A viruses caused dramatic economic losses in the domestic duck farm industry in southwestern France. Our phylogenetic analysis suggests that genotype A viruses formed 5 distinct geographic clusters in southwestern France. In some clusters, local secondary transmission might have been started by a single introduction. The intensity of the viral spread seems to correspond to the density of duck holdings in each production area. To avoid the introduction of disease into an unaffected area, it is crucial that authorities limit the movements of potentially infected birds.

Entities:  

Keywords:  France; H5N8; avian influenza; epizootic; evolution; genotypes; geoclusters; highly pathogenic; highly pathogenic avian influenza; influenza; transmission; viral zoonoses; viruses; zoonoses

Mesh:

Year:  2021        PMID: 33496244      PMCID: PMC7853534          DOI: 10.3201/eid2702.202920

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN: 1080-6040            Impact factor:   6.883


  35 in total

1.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

2.  Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses.

Authors:  Bin Zhou; Matthew E Donnelly; Derek T Scholes; Kirsten St George; Masato Hatta; Yoshihiro Kawaoka; David E Wentworth
Journal:  J Virol       Date:  2009-07-15       Impact factor: 5.103

3.  Bayesian phylogenetics with BEAUti and the BEAST 1.7.

Authors:  Alexei J Drummond; Marc A Suchard; Dong Xie; Andrew Rambaut
Journal:  Mol Biol Evol       Date:  2012-02-25       Impact factor: 16.240

4.  Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses.

Authors:  Robert Lanfear; Xia Hua; Dan L Warren
Journal:  Genome Biol Evol       Date:  2016-08-16       Impact factor: 3.416

5.  Genetic Diversity of Highly Pathogenic Avian Influenza A(H5N8/H5N5) Viruses in Italy, 2016-17.

Authors:  Alice Fusaro; Isabella Monne; Paolo Mulatti; Bianca Zecchin; Lebana Bonfanti; Silvia Ormelli; Adelaide Milani; Krizia Cecchettin; Philippe Lemey; Ana Moreno; Paola Massi; Tiziano Dorotea; Stefano Marangon; Calogero Terregino
Journal:  Emerg Infect Dis       Date:  2017-09-17       Impact factor: 6.883

6.  IcyTree: rapid browser-based visualization for phylogenetic trees and networks.

Authors:  Timothy G Vaughan
Journal:  Bioinformatics       Date:  2017-08-01       Impact factor: 6.937

7.  Bayesian estimation of past population dynamics in BEAST 1.10 using the Skygrid coalescent model.

Authors:  Verity Hill; Guy Baele
Journal:  Mol Biol Evol       Date:  2019-07-31       Impact factor: 16.240

Review 8.  Evolution, global spread, and pathogenicity of highly pathogenic avian influenza H5Nx clade 2.3.4.4.

Authors:  Dong-Hun Lee; Kateri Bertran; Jung-Hoon Kwon; David E Swayne
Journal:  J Vet Sci       Date:  2017-08-31       Impact factor: 1.672

9.  Avian influenza overview September - November 2017.

Authors:  Ian Brown; Thijs Kuiken; Paolo Mulatti; Krzysztof Smietanka; Christoph Staubach; David Stroud; Ole Roland Therkildsen; Preben Willeberg; Francesca Baldinelli; Frank Verdonck; Cornelia Adlhoch
Journal:  EFSA J       Date:  2017-12-22

10.  Novel HPAIV H5N8 Reassortant (Clade 2.3.4.4b) Detected in Germany.

Authors:  Jacqueline King; Christoph Schulze; Andreas Engelhardt; Andreas Hlinak; Sara-Lisa Lennermann; Kerstin Rigbers; Jasmin Skuballa; Christoph Staubach; Thomas C Mettenleiter; Timm Harder; Martin Beer; Anne Pohlmann
Journal:  Viruses       Date:  2020-03-04       Impact factor: 5.048

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  2 in total

Review 1.  Methods Combining Genomic and Epidemiological Data in the Reconstruction of Transmission Trees: A Systematic Review.

Authors:  Hélène Duault; Benoit Durand; Laetitia Canini
Journal:  Pathogens       Date:  2022-02-15

2.  Serological Evidence of Backyard Pig Exposure to Highly Pathogenic Avian Influenza H5N8 Virus during 2016-2017 Epizootic in France.

Authors:  Séverine Hervé; Audrey Schmitz; François-Xavier Briand; Stéphane Gorin; Stéphane Quéguiner; Éric Niqueux; Frédéric Paboeuf; Axelle Scoizec; Sophie Le Bouquin-Leneveu; Nicolas Eterradossi; Gaëlle Simon
Journal:  Pathogens       Date:  2021-05-18
  2 in total

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