Literature DB >> 33496228

Early Transmission Dynamics, Spread, and Genomic Characterization of SARS-CoV-2 in Panama.

Danilo Franco, Claudia Gonzalez, Leyda E Abrego, Jean-Paul Carrera, Yamilka Diaz, Yaset Caicedo, Ambar Moreno, Oris Chavarria, Jessica Gondola, Marlene Castillo, Elimelec Valdespino, Melissa Gaitán, Jose Martínez-Mandiche, Lizbeth Hayer, Pablo Gonzalez, Carmen Lange, Yadira Molto, Dalis Mojica, Ruben Ramos, Maria Mastelari, Lizbeth Cerezo, Lourdes Moreno, Christl A Donnelly, Juan Miguel Pascale, Nuno Rodrigues Faria, Sandra Lopez-Verges, Alexander A Martinez.   

Abstract

We report an epidemiologic analysis of 4,210 cases of infection with severe acute respiratory syndrome coronavirus 2 and genetic analysis of 313 new near-complete virus genomes in Panama during March 9-April 16, 2020. Although containment measures reduced R0 and Rt, they did not interrupt virus spread in the country.

Entities:  

Keywords:  Bayesian analysis; COVID-19 transmission; Panama; SARS-CoV-2; coronavirus disease; early cryptic transmission; epidemic dynamics; genomic diversity; outbreaks; respiratory infections; viruses

Mesh：

Year:  2021        PMID： 33496228      PMCID： PMC7853578          DOI： 10.3201/eid2702.203767

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN： 1080-6040            Impact factor:   6.883


  13 in total

1.  Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil.

Authors:  William Marciel de Souza; Lewis Fletcher Buss; Darlan da Silva Candido; Jean-Paul Carrera; Sabrina Li; Alexander E Zarebski; Rafael Henrique Moraes Pereira; Carlos A Prete; Andreza Aruska de Souza-Santos; Kris V Parag; Maria Carolina T D Belotti; Maria F Vincenti-Gonzalez; Janey Messina; Flavia Cristina da Silva Sales; Pamela Dos Santos Andrade; Vítor Heloiz Nascimento; Fabio Ghilardi; Leandro Abade; Bernardo Gutierrez; Moritz U G Kraemer; Carlos K V Braga; Renato Santana Aguiar; Neal Alexander; Philippe Mayaud; Oliver J Brady; Izabel Marcilio; Nelson Gouveia; Guangdi Li; Adriana Tami; Silvano Barbosa de Oliveira; Victor Bertollo Gomes Porto; Fabiana Ganem; Walquiria Aparecida Ferreira de Almeida; Francieli Fontana Sutile Tardetti Fantinato; Eduardo Marques Macário; Wanderson Kleber de Oliveira; Mauricio L Nogueira; Oliver G Pybus; Chieh-Hsi Wu; Julio Croda; Ester C Sabino; Nuno Rodrigues Faria
Journal:  Nat Hum Behav       Date:  2020-07-31

2.  Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.

Authors:  Joshua Quick; Nathan D Grubaugh; Steven T Pullan; Ingra M Claro; Andrew D Smith; Karthik Gangavarapu; Glenn Oliveira; Refugio Robles-Sikisaka; Thomas F Rogers; Nathan A Beutler; Dennis R Burton; Lia Laura Lewis-Ximenez; Jaqueline Goes de Jesus; Marta Giovanetti; Sarah C Hill; Allison Black; Trevor Bedford; Miles W Carroll; Marcio Nunes; Luiz Carlos Alcantara; Ester C Sabino; Sally A Baylis; Nuno R Faria; Matthew Loose; Jared T Simpson; Oliver G Pybus; Kristian G Andersen; Nicholas J Loman
Journal:  Nat Protoc       Date:  2017-05-24       Impact factor: 13.491

3.  SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy, February-March 2020.

Authors:  Barbara Bartolini; Martina Rueca; Cesare Ernesto Maria Gruber; Francesco Messina; Fabrizio Carletti; Emanuela Giombini; Eleonora Lalle; Licia Bordi; Giulia Matusali; Francesca Colavita; Concetta Castilletti; Francesco Vairo; Giuseppe Ippolito; Maria Rosaria Capobianchi; Antonino Di Caro
Journal:  Emerg Infect Dis       Date:  2020-05-27       Impact factor: 6.883

4.  Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia.

Authors:  Qun Li; Xuhua Guan; Peng Wu; Xiaoye Wang; Lei Zhou; Yeqing Tong; Ruiqi Ren; Kathy S M Leung; Eric H Y Lau; Jessica Y Wong; Xuesen Xing; Nijuan Xiang; Yang Wu; Chao Li; Qi Chen; Dan Li; Tian Liu; Jing Zhao; Man Liu; Wenxiao Tu; Chuding Chen; Lianmei Jin; Rui Yang; Qi Wang; Suhua Zhou; Rui Wang; Hui Liu; Yinbo Luo; Yuan Liu; Ge Shao; Huan Li; Zhongfa Tao; Yang Yang; Zhiqiang Deng; Boxi Liu; Zhitao Ma; Yanping Zhang; Guoqing Shi; Tommy T Y Lam; Joseph T Wu; George F Gao; Benjamin J Cowling; Bo Yang; Gabriel M Leung; Zijian Feng
Journal:  N Engl J Med       Date:  2020-01-29       Impact factor: 176.079

5.  Importation and early local transmission of COVID-19 in Brazil, 2020.

Authors:  Jaqueline Goes de Jesus; Claudio Sacchi; Darlan da Silva Candido; Ingra Morales Claro; Flávia Cristina Silva Sales; Erika Regina Manuli; Daniela Bernardes Borges da Silva; Terezinha Maria de Paiva; Margarete Aparecida Benega Pinho; Katia Correa de Oliveira Santos; Sarah Catherine Hill; Renato Santana Aguiar; Filipe Romero; Fabiana Cristina Pereira Dos Santos; Claudia Regina Gonçalves; Maria do Carmo Timenetsky; Joshua Quick; Julio Henrique Rosa Croda; Wanderson de Oliveira; Andrew Rambaut; Oliver G. Pybus; Nicholas J. Loman; Ester Cerdeira Sabino; Nuno Rodrigues Faria
Journal:  Rev Inst Med Trop Sao Paulo       Date:  2020-05-11       Impact factor: 1.846

6.  Evolution and epidemic spread of SARS-CoV-2 in Brazil.

Authors:  Darlan S Candido; Ingra M Claro; Jaqueline G de Jesus; William M Souza; Filipe R R Moreira; Simon Dellicour; Thomas A Mellan; Louis du Plessis; Rafael H M Pereira; Flavia C S Sales; Erika R Manuli; Julien Thézé; Luiz Almeida; Mariane T Menezes; Carolina M Voloch; Marcilio J Fumagalli; Thaís M Coletti; Camila A M da Silva; Mariana S Ramundo; Mariene R Amorim; Henrique H Hoeltgebaum; Swapnil Mishra; Mandev S Gill; Luiz M Carvalho; Lewis F Buss; Carlos A Prete; Jordan Ashworth; Helder I Nakaya; Pedro S Peixoto; Oliver J Brady; Samuel M Nicholls; Amilcar Tanuri; Átila D Rossi; Carlos K V Braga; Alexandra L Gerber; Ana Paula de C Guimarães; Nelson Gaburo; Cecila Salete Alencar; Alessandro C S Ferreira; Cristiano X Lima; José Eduardo Levi; Celso Granato; Giulia M Ferreira; Ronaldo S Francisco; Fabiana Granja; Marcia T Garcia; Maria Luiza Moretti; Mauricio W Perroud; Terezinha M P P Castiñeiras; Carolina S Lazari; Sarah C Hill; Andreza Aruska de Souza Santos; Camila L Simeoni; Julia Forato; Andrei C Sposito; Angelica Z Schreiber; Magnun N N Santos; Camila Zolini de Sá; Renan P Souza; Luciana C Resende-Moreira; Mauro M Teixeira; Josy Hubner; Patricia A F Leme; Rennan G Moreira; Maurício L Nogueira; Neil M Ferguson; Silvia F Costa; José Luiz Proenca-Modena; Ana Tereza R Vasconcelos; Samir Bhatt; Philippe Lemey; Chieh-Hsi Wu; Andrew Rambaut; Nick J Loman; Renato S Aguiar; Oliver G Pybus; Ester C Sabino; Nuno Rodrigues Faria
Journal:  Science       Date:  2020-07-23       Impact factor: 47.728

7.  A Novel Coronavirus from Patients with Pneumonia in China, 2019.

Authors:  Na Zhu; Dingyu Zhang; Wenling Wang; Xingwang Li; Bo Yang; Jingdong Song; Xiang Zhao; Baoying Huang; Weifeng Shi; Roujian Lu; Peihua Niu; Faxian Zhan; Xuejun Ma; Dayan Wang; Wenbo Xu; Guizhen Wu; George F Gao; Wenjie Tan
Journal:  N Engl J Med       Date:  2020-01-24       Impact factor: 91.245

8.  Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV.

Authors:  Xiuyuan Ou; Yan Liu; Xiaobo Lei; Pei Li; Dan Mi; Lili Ren; Li Guo; Ruixuan Guo; Ting Chen; Jiaxin Hu; Zichun Xiang; Zhixia Mu; Xing Chen; Jieyong Chen; Keping Hu; Qi Jin; Jianwei Wang; Zhaohui Qian
Journal:  Nat Commun       Date:  2020-03-27       Impact factor: 14.919

9.  Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.

Authors:  Bette Korber; Will M Fischer; Sandrasegaram Gnanakaran; Hyejin Yoon; James Theiler; Werner Abfalterer; Nick Hengartner; Elena E Giorgi; Tanmoy Bhattacharya; Brian Foley; Kathryn M Hastie; Matthew D Parker; David G Partridge; Cariad M Evans; Timothy M Freeman; Thushan I de Silva; Charlene McDanal; Lautaro G Perez; Haili Tang; Alex Moon-Walker; Sean P Whelan; Celia C LaBranche; Erica O Saphire; David C Montefiori
Journal:  Cell       Date:  2020-07-03       Impact factor: 66.850

10.  Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.

Authors:  Xianding Deng; Wei Gu; Scot Federman; Louis du Plessis; Oliver G Pybus; Nuno R Faria; Candace Wang; Guixia Yu; Brian Bushnell; Chao-Yang Pan; Hugo Guevara; Alicia Sotomayor-Gonzalez; Kelsey Zorn; Allan Gopez; Venice Servellita; Elaine Hsu; Steve Miller; Trevor Bedford; Alexander L Greninger; Pavitra Roychoudhury; Lea M Starita; Michael Famulare; Helen Y Chu; Jay Shendure; Keith R Jerome; Catie Anderson; Karthik Gangavarapu; Mark Zeller; Emily Spencer; Kristian G Andersen; Duncan MacCannell; Clinton R Paden; Yan Li; Jing Zhang; Suxiang Tong; Gregory Armstrong; Scott Morrow; Matthew Willis; Bela T Matyas; Sundari Mase; Olivia Kasirye; Maggie Park; Godfred Masinde; Curtis Chan; Alexander T Yu; Shua J Chai; Elsa Villarino; Brandon Bonin; Debra A Wadford; Charles Y Chiu
Journal:  Science       Date:  2020-06-08       Impact factor: 47.728
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  7 in total

Review 1.  One year into the pandemic: Short-term evolution of SARS-CoV-2 and emergence of new lineages.

Authors:  Fernando González-Candelas; Marie-Anne Shaw; Tung Phan; Urmila Kulkarni-Kale; Dimitrios Paraskevis; Fabio Luciani; Hirokazu Kimura; Manuela Sironi
Journal:  Infect Genet Evol       Date:  2021-04-26       Impact factor: 4.393

2.  Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador.

Authors:  Bernardo Gutierrez; Sully Márquez; Belén Prado-Vivar; Mónica Becerra-Wong; Juan José Guadalupe; Darlan da Silva Candido; Juan Carlos Fernandez-Cadena; Gabriel Morey-Leon; Rubén Armas-Gonzalez; Derly Madeleiny Andrade-Molina; Alfredo Bruno; Domenica de Mora; Maritza Olmedo; Denisse Portugal; Manuel Gonzalez; Alberto Orlando; Jan Felix Drexler; Andres Moreira-Soto; Anna-Lena Sander; Sebastian Brünink; Arne Kühne; Leandro Patiño; Andrés Carrazco-Montalvo; Orson Mestanza; Jeannete Zurita; Gabriela Sevillano; Louis du Plessis; John T McCrone; Josefina Coloma; Gabriel Trueba; Verónica Barragán; Patricio Rojas-Silva; Michelle Grunauer; Moritz U G Kraemer; Nuno R Faria; Marina Escalera-Zamudio; Oliver G Pybus; Paúl Cárdenas
Journal:  medRxiv       Date:  2021-04-05

3.  Severe acute respiratory syndrome coronavirus 2 detected in placentas of 2 coronavirus disease 2019-positive asymptomatic pregnant women-case report.

Authors:  Jaime Sanchez; Paulino Vigil-De Gracia; Erika Guerrero; Melissa Gaitán; Cindy Fu; María Chen-Germán; Rodrigo Villalobos; Luis Coronado; Alexander A Martínez; Dimelza Araúz; Lisseth Saenz; Oris Chavarría; Jessica Góndola; Ambar Moreno; Claudia González; Shantal Vega; Sara Campana; Jorge Ng Chinkee; Sandra López-Vergès; Mairim Alexandra Solís
Journal:  AJOG Glob Rep       Date:  2021-01-27

4.  Trade, uneven development and people in motion: Used territories and the initial spread of COVID-19 in Mesoamerica and the Caribbean.

Authors:  Luis Fernando Chaves; Mariel D Friberg; Lisbeth A Hurtado; Rodrigo Marín Rodríguez; David O'Sullivan; Luke R Bergmann
Journal:  Socioecon Plann Sci       Date:  2021-09-29       Impact factor: 4.923

5.  Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic.

Authors:  Blanca Taboada; Selene Zárate; Pavel Iša; Celia Boukadida; Joel Armando Vazquez-Perez; José Esteban Muñoz-Medina; José Ernesto Ramírez-González; Andreu Comas-García; Concepción Grajales-Muñiz; Alma Rincón-Rubio; Margarita Matías-Florentino; Alejandro Sanchez-Flores; Edgar Mendieta-Condado; Jerome Verleyen; Gisela Barrera-Badillo; Lucía Hernández-Rivas; Fidencio Mejía-Nepomuceno; José Arturo Martínez-Orozco; Eduardo Becerril-Vargas; Susana López; Irma López-Martínez; Santiago Ávila-Ríos; Carlos F Arias
Journal:  Viruses       Date:  2021-10-26       Impact factor: 5.048

6.  Genomic epidemiology of SARS-CoV-2 transmission lineages in Ecuador.

Authors:  Bernardo Gutierrez; Sully Márquez; Belén Prado-Vivar; Mónica Becerra-Wong; Juan José Guadalupe; Darlan Da Silva Candido; Juan Carlos Fernandez-Cadena; Gabriel Morey-Leon; Rubén Armas-Gonzalez; Derly Madeleiny Andrade-Molina; Alfredo Bruno; Domenica De Mora; Maritza Olmedo; Denisse Portugal; Manuel Gonzalez; Alberto Orlando; Jan Felix Drexler; Andres Moreira-Soto; Anna-Lena Sander; Sebastian Brünink; Arne Kühne; Leandro Patiño; Andrés Carrazco-Montalvo; Orson Mestanza; Jeannete Zurita; Gabriela Sevillano; Louis Du Plessis; John T McCrone; Josefina Coloma; Gabriel Trueba; Verónica Barragán; Patricio Rojas-Silva; Michelle Grunauer; Moritz U G Kraemer; Nuno R Faria; Marina Escalera-Zamudio; Oliver G Pybus; Paúl Cárdenas
Journal:  Virus Evol       Date:  2021-06-04

7.  Dynamics of Mask Use as a Prevention Strategy against SARS-CoV-2 in Panama.

Authors:  Hermógenes Fernández-Marín; Gaspar Bruner-Montero; Ana Portugal-Loayza; Virginia Miranda; Alcibiades Elias Villarreal Dominguez; Eduardo Ortega-Barría; Virginia Núñez-Samudio; Iván Landires; Luis C Mejía; Sandra López-Vergès; William T Wcislo; Jagannatha Rao Kosagisharaf
Journal:  Int J Environ Res Public Health       Date:  2021-12-09       Impact factor: 3.390
  7 in total

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