Literature DB >> 33495488

Valproic acid influences the expression of genes implicated with hyperglycaemia-induced complement and coagulation pathways.

Marina Barreto Felisbino1,2, Mark Ziemann2, Ishant Khurana2, Jun Okabe2, Keith Al-Hasani2, Scott Maxwell2, K N Harikrishnan2, Camila Borges Martins de Oliveira1, Maria Luiza S Mello1, Assam El-Osta3,4,5,6,7.   

Abstract

Because the liver plays a major role in metabolic homeostasis and secretion of clotting factors and inflammatory innate immune proteins, there is interest in understanding the mechanisms of hepatic cell activation under hyperglycaemia and whether this can be attenuated pharmacologically. We have previously shown that hyperglycaemia stimulates major changes in chromatin organization and metabolism in hepatocytes, and that the histone deacetylase inhibitor valproic acid (VPA) is able to reverse some of these metabolic changes. In this study, we have used RNA-sequencing (RNA-seq) to investigate how VPA influences gene expression in hepatocytes. Interesting, we observed that VPA attenuates hyperglycaemia-induced activation of complement and coagulation cascade genes. We also observe that many of the gene activation events coincide with changes to histone acetylation at the promoter of these genes indicating that epigenetic regulation is involved in VPA action.

Entities:  

Year:  2021        PMID: 33495488      PMCID: PMC7835211          DOI: 10.1038/s41598-021-81794-4

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  90 in total

1.  featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Authors:  Yang Liao; Gordon K Smyth; Wei Shi
Journal:  Bioinformatics       Date:  2013-11-13       Impact factor: 6.937

2.  Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells.

Authors:  Luciano Pirola; Aneta Balcerczyk; Richard W Tothill; Izhak Haviv; Antony Kaspi; Sebastian Lunke; Mark Ziemann; Tom Karagiannis; Stephen Tonna; Adam Kowalczyk; Bryan Beresford-Smith; Geoff Macintyre; Ma Kelong; Zhang Hongyu; Jingde Zhu; Assam El-Osta
Journal:  Genome Res       Date:  2011-09-02       Impact factor: 9.043

Review 3.  Discovering new treatments for Alzheimer's disease by repurposing approved medications.

Authors:  Brian S Appleby; Jeffrey L Cummings
Journal:  Curr Top Med Chem       Date:  2013       Impact factor: 3.295

4.  Role for complement in the development of seizures following acute viral infection.

Authors:  Jane E Libbey; Nikki J Kirkman; Karen S Wilcox; H Steve White; Robert S Fujinami
Journal:  J Virol       Date:  2010-04-28       Impact factor: 5.103

Review 5.  Hyperglycemia: a prothrombotic factor?

Authors:  B A Lemkes; J Hermanides; J H Devries; F Holleman; J C M Meijers; J B L Hoekstra
Journal:  J Thromb Haemost       Date:  2010-05-12       Impact factor: 5.824

6.  Valproate induces replication-independent active DNA demethylation.

Authors:  Nancy Detich; Veronica Bovenzi; Moshe Szyf
Journal:  J Biol Chem       Date:  2003-05-14       Impact factor: 5.157

7.  Diabetes mellitus is associated with shortened activated partial thromboplastin time and increased fibrinogen values.

Authors:  Ying Zhao; Jie Zhang; Juanwen Zhang; Jianping Wu
Journal:  PLoS One       Date:  2011-01-28       Impact factor: 3.240

8.  Genes are often sheltered from the global histone hyperacetylation induced by HDAC inhibitors.

Authors:  John Halsall; Vibhor Gupta; Laura P O'Neill; Bryan M Turner; Karl P Nightingale
Journal:  PLoS One       Date:  2012-03-30       Impact factor: 3.240

9.  Vascular histone deacetylation by pharmacological HDAC inhibition.

Authors:  Haloom Rafehi; Aneta Balcerczyk; Sebastian Lunke; Antony Kaspi; Mark Ziemann; Harikrishnan Kn; Jun Okabe; Ishant Khurana; Jenny Ooi; Abdul Waheed Khan; Xiao-Jun Du; Lisa Chang; Izhak Haviv; Samuel T Keating; Tom C Karagiannis; Assam El-Osta
Journal:  Genome Res       Date:  2014-04-14       Impact factor: 9.043

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

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  5 in total

1.  HDAC Inhibition with Valproate Improves Direct Cytotoxicity of Monocytes against Mesothelioma Tumor Cells.

Authors:  Clotilde Hoyos; Alexis Fontaine; Jean-Rock Jacques; Vincent Heinen; Renaud Louis; Bernard Duysinx; Arnaud Scherpereel; Eric Wasielewski; Majeed Jamakhani; Malik Hamaidia; Luc Willems
Journal:  Cancers (Basel)       Date:  2022-04-26       Impact factor: 6.575

Review 2.  SARS-CoV-2 Infection, Sex-Related Differences, and a Possible Personalized Treatment Approach with Valproic Acid: A Review.

Authors:  Donatas Stakišaitis; Linas Kapočius; Angelija Valančiūtė; Ingrida Balnytė; Tomas Tamošuitis; Arūnas Vaitkevičius; Kęstutis Sužiedėlis; Daiva Urbonienė; Vacis Tatarūnas; Evelina Kilimaitė; Dovydas Gečys; Vaiva Lesauskaitė
Journal:  Biomedicines       Date:  2022-04-21

3.  Nuclear oligo hashing improves differential analysis of single-cell RNA-seq.

Authors:  Hyeon-Jin Kim; Greg Booth; Lauren Saunders; Sanjay Srivatsan; José L McFaline-Figueroa; Cole Trapnell
Journal:  Nat Commun       Date:  2022-05-13       Impact factor: 17.694

Review 4.  SAMe, Choline, and Valproic Acid as Possible Epigenetic Drugs: Their Effects in Pregnancy with a Special Emphasis on Animal Studies.

Authors:  Asher Ornoy; Liza Weinstein-Fudim; Maria Becker
Journal:  Pharmaceuticals (Basel)       Date:  2022-02-03

5.  Urgent need for consistent standards in functional enrichment analysis.

Authors:  Kaumadi Wijesooriya; Sameer A Jadaan; Kaushalya L Perera; Tanuveer Kaur; Mark Ziemann
Journal:  PLoS Comput Biol       Date:  2022-03-09       Impact factor: 4.475

  5 in total

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