Literature DB >> 33493842

Transcription factor-based biosensors: a molecular-guided approach for natural product engineering.

Melissa M Mitchler1, Jessie M Garcia1, Nichole E Montero1, Gavin J Williams2.   

Abstract

Natural products and their derivatives offer a rich source of chemical and biological diversity; however, traditional engineering of their biosynthetic pathways to improve yields and access to unnatural derivatives requires a precise understanding of their enzymatic processes. High-throughput screening platforms based on allosteric transcription-factor based biosensors can be leveraged to overcome the screening bottleneck to enable searching through large libraries of pathway/strain variants. Herein, the development and application of engineered allosteric transcription factor-based biosensors is described that enable optimization of precursor availability, product titers, and downstream product tailoring for advancing the natural product bioeconomy. We discuss recent successes for tailoring biosensor design, including computationally-based approaches, and present our future outlook with the integration of cell-free technologies and de novo protein design for rapidly generating biosensor tools.
Copyright © 2021 Elsevier Ltd. All rights reserved.

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Year:  2021        PMID: 33493842      PMCID: PMC8238798          DOI: 10.1016/j.copbio.2021.01.008

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   10.279


  66 in total

1.  Chimeric LysR-Type Transcriptional Biosensors for Customizing Ligand Specificity Profiles toward Flavonoids.

Authors:  Brecht De Paepe; Jo Maertens; Bartel Vanholme; Marjan De Mey
Journal:  ACS Synth Biol       Date:  2019-01-15       Impact factor: 5.110

2.  A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator.

Authors:  Huihua Sun; Huimin Zhao; Ee Lui Ang
Journal:  ACS Synth Biol       Date:  2020-02-26       Impact factor: 5.110

3.  AccR, a TetR Family Transcriptional Repressor, Coordinates Short-Chain Acyl Coenzyme A Homeostasis in Streptomyces avermitilis.

Authors:  Mengya Lyu; Yaqing Cheng; Xiao Han; Ying Wen; Yuan Song; Jilun Li; Zhi Chen
Journal:  Appl Environ Microbiol       Date:  2020-06-02       Impact factor: 4.792

4.  Pyruvate Carboxylase Variants Enabling Improved Lysine Production from Glucose Identified by Biosensor-Based High-Throughput Fluorescence-Activated Cell Sorting Screening.

Authors:  Maike Kortmann; Christina Mack; Meike Baumgart; Michael Bott
Journal:  ACS Synth Biol       Date:  2019-02-07       Impact factor: 5.110

5.  Combining genetically-encoded biosensors with high throughput strain screening to maximize erythritol production in Yarrowia lipolytica.

Authors:  Xueliang Qiu; Peng Xu; Xinrui Zhao; Guocheng Du; Juan Zhang; Jianghua Li
Journal:  Metab Eng       Date:  2020-03-26       Impact factor: 9.783

Review 6.  Blueprints for Biosensors: Design, Limitations, and Applications.

Authors:  Alexander C Carpenter; Ian T Paulsen; Thomas C Williams
Journal:  Genes (Basel)       Date:  2018-07-26       Impact factor: 4.096

7.  Displaced by Deceivers: Prevention of Biosensor Cross-Talk Is Pivotal for Successful Biosensor-Based High-Throughput Screening Campaigns.

Authors:  Lion Konstantin Flachbart; Sascha Sokolowsky; Jan Marienhagen
Journal:  ACS Synth Biol       Date:  2019-07-23       Impact factor: 5.110

8.  Improvement of cis,cis-Muconic Acid Production in Saccharomyces cerevisiae through Biosensor-Aided Genome Engineering.

Authors:  Guokun Wang; Süleyman Øzmerih; Rogério Guerreiro; Ana C Meireles; Ana Carolas; Nicholas Milne; Michael K Jensen; Bruno S Ferreira; Irina Borodina
Journal:  ACS Synth Biol       Date:  2020-02-14       Impact factor: 5.110

9.  Sensor-regulator and RNAi based bifunctional dynamic control network for engineered microbial synthesis.

Authors:  Yaping Yang; Yuheng Lin; Jian Wang; Yifei Wu; Ruihua Zhang; Mengyin Cheng; Xiaolin Shen; Jia Wang; Zhenya Chen; Chenyi Li; Qipeng Yuan; Yajun Yan
Journal:  Nat Commun       Date:  2018-08-02       Impact factor: 14.919

10.  A progesterone biosensor derived from microbial screening.

Authors:  Chloé Grazon; R C Baer; Uroš Kuzmanović; Thuy Nguyen; Mingfu Chen; Marjon Zamani; Margaret Chern; Patricia Aquino; Xiaoman Zhang; Sébastien Lecommandoux; Andy Fan; Mario Cabodi; Catherine Klapperich; Mark W Grinstaff; Allison M Dennis; James E Galagan
Journal:  Nat Commun       Date:  2020-03-09       Impact factor: 14.919

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  9 in total

1.  Using fungible biosensors to evolve improved alkaloid biosyntheses.

Authors:  Simon d'Oelsnitz; Wantae Kim; Nathaniel T Burkholder; Kamyab Javanmardi; Ross Thyer; Yan Zhang; Hal S Alper; Andrew D Ellington
Journal:  Nat Chem Biol       Date:  2022-07-07       Impact factor: 16.174

2.  Development of Genetically Encoded Biosensors for Reporting the Methyltransferase-Dependent Biosynthesis of Semisynthetic Macrolide Antibiotics.

Authors:  Yiwei Li; Megan Reed; H Tonie Wright; T Ashton Cropp; Gavin J Williams
Journal:  ACS Synth Biol       Date:  2021-09-21       Impact factor: 5.249

Review 3.  Biosensor-enabled pathway optimization in metabolic engineering.

Authors:  Yuxi Teng; Jianli Zhang; Tian Jiang; Yusong Zou; Xinyu Gong; Yajun Yan
Journal:  Curr Opin Biotechnol       Date:  2022-02-11       Impact factor: 10.279

4.  A Versatile Transcription Factor Biosensor System Responsive to Multiple Aromatic and Indole Inducers.

Authors:  Mohamed A Nasr; Logan R Timmins; Vincent J J Martin; David H Kwan
Journal:  ACS Synth Biol       Date:  2022-03-22       Impact factor: 5.249

5.  Development and Characterization of Indole-Responsive Whole-Cell Biosensor Based on the Inducible Gene Expression System from Pseudomonas putida KT2440.

Authors:  Paulius Matulis; Ingrida Kutraite; Ernesta Augustiniene; Egle Valanciene; Ilona Jonuskiene; Naglis Malys
Journal:  Int J Mol Sci       Date:  2022-04-22       Impact factor: 6.208

Review 6.  Advances, Challenges and Future Trends of Cell-Free Transcription-Translation Biosensors.

Authors:  Ting Wang; Yuan Lu
Journal:  Biosensors (Basel)       Date:  2022-05-10

Review 7.  Protein engineering for natural product biosynthesis and synthetic biology applications.

Authors:  Miles A Calzini; Alexandra A Malico; Melissa M Mitchler; Gavin J Williams
Journal:  Protein Eng Des Sel       Date:  2021-02-15       Impact factor: 1.952

Review 8.  Intelligent host engineering for metabolic flux optimisation in biotechnology.

Authors:  Lachlan J Munro; Douglas B Kell
Journal:  Biochem J       Date:  2021-10-29       Impact factor: 3.857

9.  Identification and characterization of L- and D-lactate-inducible systems from Escherichia coli MG1655, Cupriavidus necator H16 and Pseudomonas species.

Authors:  Ernesta Augustiniene; Naglis Malys
Journal:  Sci Rep       Date:  2022-02-08       Impact factor: 4.379

  9 in total

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