Literature DB >> 33490591

Characterization of the complete mitochondrial genome of Ostorhinchus novemfasciatus and phylogenetic studies of Apogoninae.

Ying Sun1.   

Abstract

The complete mitochondrial genome of Ostorhinchus novemfasciatus was first presented in this study. The full length of the mitochondrial genome was 16,779 bp, including 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNA genes, a non-coding control region (CR) and one origin of replication on the light-strand (OL). The total nucleotide composition of mitochondrial DNA was 26.0% A, 30.2% C, 26.2% T and 17.5% G. 12 PCGs used the canonical ATG as their initiation codon, whereas COI gene started with an alternative start codon GTG. The mitochondrial genome of O. novemfasciatus described in this study could be a useful basis for the management of this species and laid a foundation for further research involved with phylogenetic relationship within Apogoninae.
© 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Ostorhinchus novemfasciatus; mitochondrial genome; phylogenetic analysis

Year:  2021        PMID: 33490591      PMCID: PMC7801025          DOI: 10.1080/23802359.2020.1845579

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  10 in total

1.  Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion.

Authors:  M Miya; M Nishida
Journal:  Mol Phylogenet Evol       Date:  2000-12       Impact factor: 4.286

2.  A phenol-chloroform protocol for extracting DNA from ancient samples.

Authors:  Ross Barnett; Greger Larson
Journal:  Methods Mol Biol       Date:  2012

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Platyhelminth mitochondrial DNA: evidence for early evolutionary origin of a tRNA(serAGN) that contains a dihydrouridine arm replacement loop, and of serine-specifying AGA and AGG codons.

Authors:  J R Garey; D R Wolstenholme
Journal:  J Mol Evol       Date:  1989-05       Impact factor: 2.395

5.  Universal primers for amplification of the complete mitochondrial control region in marine fish species.

Authors:  Y Z Cheng; T J Xu; X X Jin; D Tang; T Wei; Y Y Sun; F Q Meng; G Shi; R X Wang
Journal:  Mol Biol (Mosk)       Date:  2012 Sep-Oct

6.  The complete mitochondrial genome of the yellow coaster, Acraea issoria (Lepidoptera: Nymphalidae: Heliconiinae: Acraeini): sequence, gene organization and a unique tRNA translocation event.

Authors:  Jing Hu; Daxiu Zhang; Jiasheng Hao; Dunyuan Huang; Stephen Cameron; Chaodong Zhu
Journal:  Mol Biol Rep       Date:  2009-11-29       Impact factor: 2.316

7.  The complete mitochondrial genome of a marbled eelpout Lycodes raridens (Perciformes: Zoarcidae).

Authors:  Sang-Hwa Lee; Chung-Bae Kang; Myung-Hwa Shin; Sang-Hui Lee; Moongeun Yoon; Hyung Jun Kim
Journal:  Mitochondrial DNA B Resour       Date:  2019-11-13       Impact factor: 0.658

8.  Complete mitochondrial genome of broadbanded cardinalfish (Ostorhinchus fasciatus) and phylogenetic analysis.

Authors:  Fan Da; Zheng-Yong Wen
Journal:  Mitochondrial DNA B Resour       Date:  2020-01-07       Impact factor: 0.658

9.  The complete mitochondrial genome of Trachidermus fasciatus (Scorpaeniformes: Cottidae) and phylogenetic studies of Cottidae.

Authors:  Kehua Zhu; Zhenming Lü; Liqing Liu; Li Gong; Bingjian Liu
Journal:  Mitochondrial DNA B Resour       Date:  2018-02-28       Impact factor: 0.658

10.  The complete mitochondrial genome of ostorhinchus fleurieu (kurtiformes: Apogonidae) and phylogenetic studies of apogoninae.

Authors:  Kehua Zhu; Yuanpei Gao; Pengxiang Yuan; Pinglin Cao; Xiaoguo Ying; Hengcong Tao; Bingjian Liu
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-23       Impact factor: 0.658

  10 in total

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