Literature DB >> 33490517

The complete mitochondrial genome of the longfin dragonfish Tactostoma macropus (Stomiiformes: Stomiidae).

Minoru Ijichi1, Tsuyoshi Takano1, Masumi Hasegawa1, Haruka Yashiki1, Kazuhiro Kogure1, Shigeaki Kojima1, Susumu Yoshizawa1.   

Abstract

The complete mitochondrial genome (mitogenome) was determined for the longfin dragonfish Tactostoma macropus, which is the first for the genus and the third within the family Stomiidae. The mitogenome sequence is 17,690 bp in length containing 2 ribosomal RNA genes, 22 transfer RNA genes, 13 protein-coding genes, and a control region, as in most fishes. The gene order of T. macropus showed an unreported deviation from the typical vertebrate one. Phylogenetic reconstruction using the maximum likelihood method placed T. macropus in the monophyletic Stomiiformes. Three stomiid species were recovered as a moderately supported clade in the phylogenetic tree.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Deep-sea; gene rearrangement; mitogenome; pelagic fish

Year:  2018        PMID: 33490517      PMCID: PMC7800359          DOI: 10.1080/23802359.2018.1464411

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  9 in total

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Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

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Authors:  M Miya; A Kawaguchi; M Nishida
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Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

4.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

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Authors:  Christopher P Kenaley; Shannon C Devaney; Taylor T Fjeran
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6.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

7.  MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline.

Authors:  Wataru Iwasaki; Tsukasa Fukunaga; Ryota Isagozawa; Koichiro Yamada; Yasunobu Maeda; Takashi P Satoh; Tetsuya Sado; Kohji Mabuchi; Hirohiko Takeshima; Masaki Miya; Mutsumi Nishida
Journal:  Mol Biol Evol       Date:  2013-08-16       Impact factor: 16.240

8.  Structure and variation of the mitochondrial genome of fishes.

Authors:  Takashi P Satoh; Masaki Miya; Kohji Mabuchi; Mutsumi Nishida
Journal:  BMC Genomics       Date:  2016-09-07       Impact factor: 3.969

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Journal:  Mitochondrial DNA B Resour       Date:  2017-12-16       Impact factor: 0.658

  9 in total
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1.  A new gene order in the mitochondrial genome of the deep-sea diaphanous hatchet fish Sternoptyx diaphana Hermann, 1781 (Stomiiformes: Sternoptychidae).

Authors:  Nair Vilas Arrondo; André Gomes-Dos-Santos; Esther Román Marcote; Montse Pérez; Elsa Froufe; L Filipe C Castro
Journal:  Mitochondrial DNA B Resour       Date:  2020-07-15       Impact factor: 0.658

  1 in total

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