Literature DB >> 33490516

Analysis of the complete organellar genomes of the rockweed Fucus spiralis (Fucaceae, Phaeophyceae) supports its infraspecific recognition as Fucus vesiculosus var. spiralis.

Alejandra Alvarez1, Juan Anaya1, Bibiana Arellano1, Austin Bartlebaugh1, Michael C Capurro1, Adriana Carrillo1, Isaiah R Chacon1, Lizbeth Cordova1, Bethany Corral1, Melina DaSilva1, Giselle Del Valle1, Alexis Diaz1, Isaac Diaz1, Carlos Donate1, Isabella Fusco1, Brian Garcia1, Janette Garcia1, Christian Godoy1, Victor Gonzalez1, Megan Hertzog1, Nicholas Horton1, Jeffery R Hughey1, Eli R Kallison1, Rafael Lopez1, Jennifer Martinez1, Rene Martinez1, Kianna Mendez1, Marie Pacheco1, Maria Ramirez1, David M Ramirez1, Jennifer M Rios1, Franca Rossi1, Jorge Rua1, Alyssa Sanchez1, Daniela Sanchez1, Maria Sanchez1, Karla Santos1, Rosaura Sierra1, Daniel Soto1, Alicia Steinhardt1, Jesus Tavarez1, Mark Tupas1, Rolando T Valdez1, Christian Vargas1, Rudy Vargas1, Frances L Wong1, Adrian Zamora1.   

Abstract

Fucus spiralis L. is a broadly distributed monoecious intertidal seaweed. The specific status of F. spiralis however is debatable. Here, we contribute to the bioinformatics and systematics of F. spiralis by analysing the complete mitochondrial and plastid genomes of a specimen from California, U.S.A. The F. spiralis mitogenome is 36,396 base pairs (bp) in length and contains 67 genes, and the plastid genome is 125,066 bp in length and contains 171 genes. The F. spiralis genomes are 99.7% and 99.8% similar in nucleotide sequence to F. vesiculosus, and support the revised classification of F. spiralis to Fucus vesiculosus var. spiralis.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  California; Fucus spiralis; Fucus vesiculosus; mitogenome; plastid genome

Year:  2018        PMID: 33490516      PMCID: PMC7801007          DOI: 10.1080/23802359.2018.1463829

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

1.  A mtDNA-based phylogeny of the brown algal genus Fucus (Heterokontophyta; Phaeophyta).

Authors:  James A Coyer; Galice Hoarau; Marie-Pierre Oudot-Le Secq; Wytze T Stam; Jeanine L Olsen
Journal:  Mol Phylogenet Evol       Date:  2006-02-21       Impact factor: 4.286

2.  Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis.

Authors:  Marie-Pierre Oudot-Le Secq; Susan Loiseaux-de Goër; Wytze T Stam; Jeanine L Olsen
Journal:  Curr Genet       Date:  2005-11-30       Impact factor: 3.886

3.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

4.  T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks.

Authors:  Alix Boc; Alpha Boubacar Diallo; Vladimir Makarenkov
Journal:  Nucleic Acids Res       Date:  2012-06-06       Impact factor: 16.971

5.  Phylogeny.fr: robust phylogenetic analysis for the non-specialist.

Authors:  A Dereeper; V Guignon; G Blanc; S Audic; S Buffet; F Chevenet; J-F Dufayard; S Guindon; V Lefort; M Lescot; J-M Claverie; O Gascuel
Journal:  Nucleic Acids Res       Date:  2008-04-19       Impact factor: 16.971

6.  Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids.

Authors:  Gildas Le Corguillé; Gareth Pearson; Marta Valente; Carla Viegas; Bernhard Gschloessl; Erwan Corre; Xavier Bailly; Akira F Peters; Claire Jubin; Benoit Vacherie; J Mark Cock; Catherine Leblanc
Journal:  BMC Evol Biol       Date:  2009-10-16       Impact factor: 3.260

7.  Evolution of the Northern Rockweed, Fucus distichus, in a Regime of Glacial Cycling: Implications for Benthic Algal Phylogenetics.

Authors:  Haywood Dail Laughinghouse; Kirsten M Müller; Walter H Adey; Yannick Lara; Robert Young; Gabriel Johnson
Journal:  PLoS One       Date:  2015-12-02       Impact factor: 3.240

  7 in total

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