Literature DB >> 33490490

The complete plastome sequence of Lilium wahingtonianum Kellogg (Liliaceae).

Hyoung Tae Kim1,2, Ki-Byung Lim1,2.   

Abstract

Lilium washingtonianum Kellogg is native to Western America and grows on slope in high subalpine. In the present study, the complete plastome of L. washingtonianum was sequenced. The plastome sequence was 151,967 bp long, with a large single copy region of 81,393 bp, a small single copy region of 17,352 bp, and two inverted repeat regions of 26,611 bp each. Total 133 genes were identified, including 83 coding genes, 8 ribosomal RNAs, 38 transfer RNAs, and 4 pseudogenes. Among four pseudogenes, pseudo ndhF gene was the first to report among Lilium species so far. The phylogenetic position of L. washingtonianum was sister to L. superbum but American lilies were not monophyletic.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Lilium washingtonianum; phylogeny; plastome

Year:  2018        PMID: 33490490      PMCID: PMC7800384          DOI: 10.1080/23802359.2018.1424579

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

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2.  More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy.

Authors:  Antonis Rokas; Sean B Carroll
Journal:  Mol Biol Evol       Date:  2005-03-02       Impact factor: 16.240

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Authors:  Yun-peng Du; Heng-bin He; Zhong-xuan Wang; Shuang Li; Chi Wei; Xiao-na Yuan; Qi Cui; Gui-xia Jia
Journal:  J Plant Res       Date:  2013-11-09       Impact factor: 2.629

4.  A molecular phylogeny of Lilium in the internal transcribed spacer region of nuclear ribosomal DNA.

Authors:  T Nishikawa; K Okazaki; T Uchino; K Arakawa; T Nagamine
Journal:  J Mol Evol       Date:  1999-08       Impact factor: 2.395

5.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

6.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

  6 in total

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