Literature DB >> 33490462

The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan.

Shynar S Dagarova1,2, Gulnara T Sitpayeva2, Jae-Hong Pak3,4, Jung Sung Kim3.   

Abstract

The complete chloroplast (cp) genome sequence of Rheum wittrockii, an endangered and medicinal plant of Kazakhstan, was firstly determined in the present study. It was 159,051 bp and contained a large single copy region (84,750 bp) and a small single copy region (12,999 bp) which were separated by two inverted repeat regions (30,651 bp). In total, 131 genes were identified and they were consisted of 79 coding genes, 8 rRNA genes, and 36 tRNA genes. rpl23 was pseudogenes due to sequence substitution. Among 23 genes containing introns, rps12 and ycf3 contained two introns and the rest had just one intron. Comparing to Chinese R. palmatum chloroplast genome, rpl32 and rpoA gene were shortened due to 1bp and 7bp deletion at poly-T and poly-A, respectively.
© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Rheum wittrockii; chloroplast genome; rpl32; rpoA

Year:  2017        PMID: 33490462      PMCID: PMC7801014          DOI: 10.1080/23802359.2017.1361359

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  Rapid radiation of Rheum (Polygonaceae) and parallel evolution of morphological traits.

Authors:  Yongshuai Sun; Ailan Wang; Dongshi Wan; Qian Wang; Jianquan Liu
Journal:  Mol Phylogenet Evol       Date:  2012-01-12       Impact factor: 4.286

2.  Molecular phylogeny, recent radiation and evolution of gross morphology of the rhubarb genus Rheum (Polygonaceae) inferred from chloroplast DNA trnL-F sequences.

Authors:  Ailan Wang; Meihua Yang; Jianquan Liu
Journal:  Ann Bot       Date:  2005-07-01       Impact factor: 4.357

3.  The complete chloroplast genome sequence of the medicinal plant Rheum palmatum L. (Polygonaceae).

Authors:  Kai Fan; Xiao-Jie Sun; Min Huang; Xu-Mei Wang
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-07-08       Impact factor: 1.514

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

6.  Multiple ITS copies reveal extensive hybridization within Rheum (Polygonaceae), a genus that has undergone rapid radiation.

Authors:  Dongshi Wan; Yongshuai Sun; Xu Zhang; Xiaotao Bai; Jun Wang; Ailan Wang; Richard Milne
Journal:  PLoS One       Date:  2014-02-27       Impact factor: 3.240

  6 in total

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