Literature DB >> 33490449

Complete chloroplast genome sequences of Wonwhang (Pyrus pyrifolia) and its phylogenetic analysis.

Ho Yong Chung1, Tae-Ho Lee1, Yoon-Kyeong Kim2, Jung Sun Kim1.   

Abstract

The complete chloroplast genome of Wonwhang (BioSample SAMN05196235), Pyrus pyrifolia, was assembled and analyzed by de novo assembly using whole-genome sequencing data. The accession NC_015996 was used as a reference sequence in this study. The total chloroplast genome size of the Wonwhang was 159,922 bp in length, including a pair of inverted repeat regions (IRs) of 26,392 bp that are separated by a large single-copy region of 72,023 bp and a small single-copy region of 19,235 bp. A total of 132 genes, including 93 protein-coding genes, 31 tRNA genes and eight rRNA genes, were predicted from the chloroplast genomes. Among them, 18 genes occur in IRs, containing nine protein-coding genes, five tRNA genes and four rRNA genes. The GC content of Wonwhang chloroplast genome is 36.6%. The phylogenetic analysis with nine Rosids species and three other species revealed that Wonwhang was clustered with Malus genus.
© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Pyrus pyrifolia; Wonwhang; chloroplast genome; phylogenetic analysis; whole-genome sequencing

Year:  2017        PMID: 33490449      PMCID: PMC7801008          DOI: 10.1080/23802359.2017.1331328

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


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