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Literature DB >> 33490390

The mitochondrial genome of the nematode endoparasitic fungus Hirsutella rhossiliensis.

Niuniu Wang^1,2, Yongjie Zhang³, Muzammil Hussain^1,2, Kuan Li¹, Meichun Xiang¹, Xingzhong Liu¹.

Abstract

In this study, we report the complete mitochondrial genome of Hirsutella rhossiliensis (Ophiocordycipitaceae, Hypocreales, Ascomycota). We construct the mitochondrial DNA genome organization of 62 483 bp in length of H. rhossiliensis by using the whole-genome resequencing method. Conserved genes including the large and small rRNA subunits, 26 tRNA and 14 protein-coding genes are identified. These protein-coding genes utilize ATG, GTG or TTG as initiation codons and TAA or TAG as termination codons. Moreover, we detect 10 group I introns and one unclassified intron in six genes (rnl, cob, cox1, cox3, nad1 and nad5) encoding ORFs of ribosomal protein S3 and GIY-YIG/LAGLIDADG endonucleases or hypothetical proteins. This mitochondrial genome will be useful in understanding the distribution and genetic diversity of this species.

Entities: Disease Gene Species

Keywords: Hirsutella rhossiliensis; Hypocreales; Ophiocordycipitaceae; mitochondrial genome

Year: 2016 PMID： 33490390 PMCID： PMC7800308 DOI： 10.1080/23802359.2016.1143336

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

7 in total

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors: Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal: J Comput Biol Date: 2012-04-16 Impact factor: 1.479

2. The complete mitochondrial genome of the nematode endoparasitic fungus Hirsutella minnesotensis.

Authors: Yong-Jie Zhang; Shu Zhang; Xing-Zhong Liu
Journal: Mitochondrial DNA A DNA Mapp Seq Anal Date: 2015-06-01 Impact factor: 1.514

3. Phylogenetic classification of Cordyceps and the clavicipitaceous fungi.

Authors: Gi-Ho Sung; Nigel L Hywel-Jones; Jae-Mo Sung; J Jennifer Luangsa-Ard; Bhushan Shrestha; Joseph W Spatafora
Journal: Stud Mycol Date: 2007 Impact factor: 16.097

4. Development of a transformation system for Hirsutella spp. and visualization of the mode of nematode infection by GFP-labeled H. minnesotensis.

Authors: Jingzu Sun; Sook-Young Park; Seogchan Kang; Xingzhong Liu; Junzhi Qiu; Meichun Xiang
Journal: Sci Rep Date: 2015-07-20 Impact factor: 4.379

The mitochondrial genome of the nematode endoparasitic fungus Hirsutella rhossiliensis.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

2. The complete mitochondrial genome of the nematode endoparasitic fungus Hirsutella minnesotensis.

3. Phylogenetic classification of Cordyceps and the clavicipitaceous fungi.

4. Development of a transformation system for Hirsutella spp. and visualization of the mode of nematode infection by GFP-labeled H. minnesotensis.

5. Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis.

6. Fast and accurate short read alignment with Burrows-Wheeler transform.

7. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix.