Literature DB >> 33489282

A parsimonious approach for spatial transmission and heterogeneity in the COVID-19 propagation.

L Roques1, O Bonnefon1, V Baudrot1, S Soubeyrand1, H Berestycki2,3.   

Abstract

Raw data on the number of deaths at a country level generally indicate a spatially variable distribution of COVID-19 incidence. An important issue is whether this pattern is a consequence of environmental heterogeneities, such as the climatic conditions, during the course of the outbreak. Another fundamental issue is to understand the spatial spreading of COVID-19. To address these questions, we consider four candidate epidemiological models with varying complexity in terms of initial conditions, contact rates and non-local transmissions, and we fit them to French mortality data with a mixed probabilistic-ODE approach. Using statistical criteria, we select the model with non-local transmission corresponding to a diffusion on the graph of counties that depends on the geographic proximity, with time-dependent contact rate and spatially constant parameters. This suggests that in a geographically middle size centralized country such as France, once the epidemic is established, the effect of global processes such as restriction policies and sanitary measures overwhelms the effect of local factors. Additionally, this approach reveals the latent epidemiological dynamics including the local level of immunity, and allows us to evaluate the role of non-local interactions on the future spread of the disease.
© 2020 The Authors.

Entities:  

Keywords:  COVID-19; immunity rate; mechanistic-statistical model; non-local transmission; spatial diffusion

Year:  2020        PMID: 33489282      PMCID: PMC7813252          DOI: 10.1098/rsos.201382

Source DB:  PubMed          Journal:  R Soc Open Sci        ISSN: 2054-5703            Impact factor:   2.963


  32 in total

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2.  Synchrony, waves, and spatial hierarchies in the spread of influenza.

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Journal:  Science       Date:  2006-03-30       Impact factor: 47.728

3.  The role of population heterogeneity and human mobility in the spread of pandemic influenza.

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4.  Temporal dynamics in viral shedding and transmissibility of COVID-19.

Authors:  Xi He; Eric H Y Lau; Peng Wu; Xilong Deng; Jian Wang; Xinxin Hao; Yiu Chung Lau; Jessica Y Wong; Yujuan Guan; Xinghua Tan; Xiaoneng Mo; Yanqing Chen; Baolin Liao; Weilie Chen; Fengyu Hu; Qing Zhang; Mingqiu Zhong; Yanrong Wu; Lingzhai Zhao; Fuchun Zhang; Benjamin J Cowling; Fang Li; Gabriel M Leung
Journal:  Nat Med       Date:  2020-04-15       Impact factor: 53.440

5.  The challenges of modeling and forecasting the spread of COVID-19.

Authors:  Andrea L Bertozzi; Elisa Franco; George Mohler; Martin B Short; Daniel Sledge
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-02       Impact factor: 11.205

6.  Using Early Data to Estimate the Actual Infection Fatality Ratio from COVID-19 in France.

Authors:  Lionel Roques; Etienne K Klein; Julien Papaïx; Antoine Sar; Samuel Soubeyrand
Journal:  Biology (Basel)       Date:  2020-05-08

7.  Monitoring the COVID-19 epidemic in the context of widespread local transmission.

Authors:  Alberto L García-Basteiro; Carlos Chaccour; Caterina Guinovart; Anna Llupià; Joe Brew; Antoni Trilla; Antoni Plasencia
Journal:  Lancet Respir Med       Date:  2020-04-02       Impact factor: 30.700

8.  Temperature Decreases Spread Parameters of the New Covid-19 Case Dynamics.

Authors:  Jacques Demongeot; Yannis Flet-Berliac; Hervé Seligmann
Journal:  Biology (Basel)       Date:  2020-05-03

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Journal:  Lancet Infect Dis       Date:  2020-02-19       Impact factor: 25.071

10.  Estimating the infection and case fatality ratio for coronavirus disease (COVID-19) using age-adjusted data from the outbreak on the Diamond Princess cruise ship, February 2020.

Authors:  Timothy W Russell; Joel Hellewell; Christopher I Jarvis; Kevin van Zandvoort; Sam Abbott; Ruwan Ratnayake; Stefan Flasche; Rosalind M Eggo; W John Edmunds; Adam J Kucharski
Journal:  Euro Surveill       Date:  2020-03
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  5 in total

1.  Population density impact on COVID-19 mortality rate: A multifractal analysis using French data.

Authors:  R Pascoal; H Rocha
Journal:  Physica A       Date:  2022-01-29       Impact factor: 3.778

2.  Heterogeneity of the COVID-19 Pandemic in the United States of America: A Geo-Epidemiological Perspective.

Authors:  Alexandre Vallée
Journal:  Front Public Health       Date:  2022-01-26

3.  Population density and spreading of COVID-19 in England and Wales.

Authors:  Jack Sutton; Golnaz Shahtahmassebi; Haroldo V Ribeiro; Quentin S Hanley
Journal:  PLoS One       Date:  2022-03-31       Impact factor: 3.240

4.  Modelling COVID-19 contagion: risk assessment and targeted mitigation policies.

Authors:  Rama Cont; Artur Kotlicki; Renyuan Xu
Journal:  R Soc Open Sci       Date:  2021-03-31       Impact factor: 2.963

5.  The Geographical Distribution and Influencing Factors of COVID-19 in China.

Authors:  Weiwei Li; Ping Zhang; Kaixu Zhao; Sidong Zhao
Journal:  Trop Med Infect Dis       Date:  2022-03-06
  5 in total

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