Literature DB >> 33489277

Correlating in vitro performance with physico-chemical characteristics of nanofibrous scaffolds for skin tissue engineering using supervised machine learning algorithms.

Lakshmi Y Sujeeun1,2, Nowsheen Goonoo1, Honita Ramphul1, Itisha Chummun1, Fanny Gimié3, Shakuntala Baichoo2, Archana Bhaw-Luximon1.   

Abstract

The engineering of polymeric scaffolds for tissue regeneration has known a phenomenal growth during the past decades as materials scientists seek to understand cell biology and cell-material behaviour. Statistical methods are being applied to physico-chemical properties of polymeric scaffolds for tissue engineering (TE) to guide through the complexity of experimental conditions. We have attempted using experimental in vitro data and physico-chemical data of electrospun polymeric scaffolds, tested for skin TE, to model scaffold performance using machine learning (ML) approach. Fibre diameter, pore diameter, water contact angle and Young's modulus were used to find a correlation with 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay of L929 fibroblasts cells on the scaffolds after 7 days. Six supervised learning algorithms were trained on the data using Seaborn/Scikit-learn Python libraries. After hyperparameter tuning, random forest regression yielded the highest accuracy of 62.74%. The predictive model was also correlated with in vivo data. This is a first preliminary study on ML methods for the prediction of cell-material interactions on nanofibrous scaffolds.
© 2020 The Authors.

Entities:  

Keywords:  cell–material interaction; polymeric scaffold performance; predictive model; skin tissue engineering; supervised learning algorithms

Year:  2020        PMID: 33489277      PMCID: PMC7813265          DOI: 10.1098/rsos.201293

Source DB:  PubMed          Journal:  R Soc Open Sci        ISSN: 2054-5703            Impact factor:   2.963


  14 in total

1.  Using the R-MAPE index as a resistant measure of forecast accuracy.

Authors:  Juan José Montaño Moreno; Alfonso Palmer Pol; Albert Sesé Abad; Berta Cajal Blasco
Journal:  Psicothema       Date:  2013

2.  Machine learning: an indispensable tool in bioinformatics.

Authors:  Iñaki Inza; Borja Calvo; Rubén Armañanzas; Endika Bengoetxea; Pedro Larrañaga; José A Lozano
Journal:  Methods Mol Biol       Date:  2010

Review 3.  How Not To Drown in Data: A Guide for Biomaterial Engineers.

Authors:  Aliaksei S Vasilevich; Aurélie Carlier; Jan de Boer; Shantanu Singh
Journal:  Trends Biotechnol       Date:  2017-07-07       Impact factor: 19.536

Review 4.  A review on the use of computational methods to characterize, design, and optimize tissue engineering scaffolds, with a potential in 3D printing fabrication.

Authors:  Shuo Zhang; Sanjairaj Vijayavenkataraman; Wen Feng Lu; Jerry Y H Fuh
Journal:  J Biomed Mater Res B Appl Biomater       Date:  2018-10-09       Impact factor: 3.368

5.  Machine learning in biomedical engineering.

Authors:  Cheolsoo Park; Clive Cheong Took; Joon-Kyung Seong
Journal:  Biomed Eng Lett       Date:  2018-02-06

Review 6.  Advances in tissue engineering of nanocellulose-based scaffolds: A review.

Authors:  Huize Luo; Ruitao Cha; Juanjuan Li; Wenshuai Hao; Yan Zhang; Fengshan Zhou
Journal:  Carbohydr Polym       Date:  2019-07-29       Impact factor: 9.381

7.  Fibroblast growth on polymer surfaces and biosynthesis of collagen.

Authors:  Y Tamada; Y Ikada
Journal:  J Biomed Mater Res       Date:  1994-07

8.  Improved Multicellular Response, Biomimetic Mineralization, Angiogenesis, and Reduced Foreign Body Response of Modified Polydioxanone Scaffolds for Skeletal Tissue Regeneration.

Authors:  Nowsheen Goonoo; Amir Fahmi; Ulrich Jonas; Fanny Gimié; Imade Ait Arsa; Sébastien Bénard; Holger Schönherr; Archana Bhaw-Luximon
Journal:  ACS Appl Mater Interfaces       Date:  2019-01-30       Impact factor: 9.229

9.  Sugar-cane bagasse derived cellulose enhances performance of polylactide and polydioxanone electrospun scaffold for tissue engineering.

Authors:  Honita Ramphul; Archana Bhaw-Luximon; Dhanjay Jhurry
Journal:  Carbohydr Polym       Date:  2017-09-14       Impact factor: 9.381

10.  Sugar-cane bagasse cellulose-based scaffolds promote multi-cellular interactions, angiogenesis and reduce inflammation for skin tissue regeneration.

Authors:  Honita Ramphul; Fanny Gimié; Jessica Andries; Dhanjay Jhurry; Archana Bhaw-Luximon
Journal:  Int J Biol Macromol       Date:  2020-04-25       Impact factor: 6.953

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