Literature DB >> 33488652

From Trash to Luxury: The Potential Role of Plant LncRNA in DNA Methylation During Abiotic Stress.

Maria Clara de Oliveira Urquiaga1, Flávia Thiebaut1, Adriana Silva Hemerly1, Paulo Cavalcanti Gomes Ferreira1.   

Abstract

Remarkable progress has been made in elucidating important roles of plant non-coding RNAs. Among these RNAs, long noncoding RNAs (lncRNAs) have gained widespread attention, especially their role in plant environmental stress responses. LncRNAs act at different levels of gene expression regulation, and one of these mechanisms is by recruitment of DNA methyltransferases or demethylases to regulate the target gene transcription. In this mini-review, we highlight the function of lncRNAs, including their potential role in RNA-directed DNA Methylation (RdDM) silencing pathway and their potential function under abiotic stresses conditions. Moreover, we also present and discuss studies of lncRNAs in crops. Finally, we propose a path outlook for future research that may be important for plant breeding.
Copyright © 2021 Urquiaga, Thiebaut, Hemerly and Ferreira.

Entities:  

Keywords:  environmental stresses; epigenetic; gene regulation; non-coding RNAs; plant breeding

Year:  2021        PMID: 33488652      PMCID: PMC7815527          DOI: 10.3389/fpls.2020.603246

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   5.753


  87 in total

1.  Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit.

Authors:  Zhaobo Lang; Yihai Wang; Kai Tang; Dengguo Tang; Tatsiana Datsenka; Jingfei Cheng; Yijing Zhang; Avtar K Handa; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

2.  Expression analysis of lncRNA AK370814 involved in the barley vitamin B6 salvage pathway under salinity.

Authors:  Elif Karlik; Nermin Gozukirmizi
Journal:  Mol Biol Rep       Date:  2018-10-08       Impact factor: 2.316

3.  PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis.

Authors:  Rebecca A Mosher; Frank Schwach; David Studholme; David C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

4.  Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.

Authors:  David Secco; Chuang Wang; Huixia Shou; Matthew D Schultz; Serge Chiarenza; Laurent Nussaume; Joseph R Ecker; James Whelan; Ryan Lister
Journal:  Elife       Date:  2015-07-21       Impact factor: 8.140

5.  CANTATAdb: A Collection of Plant Long Non-Coding RNAs.

Authors:  Michał W Szcześniak; Wojciech Rosikiewicz; Izabela Makałowska
Journal:  Plant Cell Physiol       Date:  2015-12-12       Impact factor: 4.927

6.  RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats.

Authors:  Halise Busra Cagirici; Burcu Alptekin; Hikmet Budak
Journal:  Sci Rep       Date:  2017-09-06       Impact factor: 4.379

7.  Modular function of long noncoding RNA, COLDAIR, in the vernalization response.

Authors:  Dong-Hwan Kim; Yanpeng Xi; Sibum Sung
Journal:  PLoS Genet       Date:  2017-07-31       Impact factor: 5.917

8.  PlantRNA_Sniffer: A SVM-Based Workflow to Predict Long Intergenic Non-Coding RNAs in Plants.

Authors:  Lucas Maciel Vieira; Clicia Grativol; Flavia Thiebaut; Thais G Carvalho; Pablo R Hardoim; Adriana Hemerly; Sergio Lifschitz; Paulo Cavalcanti Gomes Ferreira; Maria Emilia M T Walter
Journal:  Noncoding RNA       Date:  2017-03-04

9.  Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots.

Authors:  Rui Chen; Ming Li; Huiyuan Zhang; Lijin Duan; Xianjun Sun; Qiyan Jiang; Hui Zhang; Zheng Hu
Journal:  BMC Genomics       Date:  2019-10-12       Impact factor: 3.969

10.  Genome-wide analysis of long non-coding RNAs (lncRNAs) in two contrasting rapeseed (Brassica napus L.) genotypes subjected to drought stress and re-watering.

Authors:  Xiaoyu Tan; Su Li; Liyong Hu; Chunlei Zhang
Journal:  BMC Plant Biol       Date:  2020-02-19       Impact factor: 4.215

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  7 in total

1.  Full-Length Transcriptional Analysis of the Same Soybean Genotype With Compatible and Incompatible Reactions to Heterodera glycines Reveals Nematode Infection Activating Plant Defense Response.

Authors:  Minghui Huang; Ye Jiang; Ruifeng Qin; Dan Jiang; Doudou Chang; Zhongyan Tian; Chunjie Li; Congli Wang
Journal:  Front Plant Sci       Date:  2022-05-18       Impact factor: 6.627

2.  Genome-Wide Identification and Characterization of Long Noncoding RNAs in Populus × canescens Roots Treated With Different Nitrogen Fertilizers.

Authors:  Jing Zhou; Ling-Yu Yang; Xin Chen; Weng-Guang Shi; Shu-Rong Deng; Zhi-Bin Luo
Journal:  Front Plant Sci       Date:  2022-05-12       Impact factor: 6.627

Review 3.  Using the Knowledge of Post-transcriptional Regulations to Guide Gene Selections for Molecular Breeding in Soybean.

Authors:  Yee-Shan Ku; Ming-Yan Cheung; Sau-Shan Cheng; Muhammad Azhar Nadeem; Gyuhwa Chung; Hon-Ming Lam
Journal:  Front Plant Sci       Date:  2022-03-31       Impact factor: 5.753

Review 4.  Long Non-Coding RNAs as Emerging Regulators of Pathogen Response in Plants.

Authors:  Yashraaj Sharma; Alok Sharma; Kashmir Singh; Santosh Kumar Upadhyay
Journal:  Noncoding RNA       Date:  2022-01-11

Review 5.  Non-Coding RNAs in Response to Drought Stress.

Authors:  Temesgen Assefa Gelaw; Neeti Sanan-Mishra
Journal:  Int J Mol Sci       Date:  2021-11-20       Impact factor: 5.923

Review 6.  An Epigenetic Alphabet of Crop Adaptation to Climate Change.

Authors:  Francesco Guarino; Angela Cicatelli; Stefano Castiglione; Dolores R Agius; Gul Ebru Orhun; Sotirios Fragkostefanakis; Julie Leclercq; Judit Dobránszki; Eirini Kaiserli; Michal Lieberman-Lazarovich; Merike Sõmera; Cecilia Sarmiento; Cristina Vettori; Donatella Paffetti; Anna M G Poma; Panagiotis N Moschou; Mateo Gašparović; Sanaz Yousefi; Chiara Vergata; Margot M J Berger; Philippe Gallusci; Dragana Miladinović; Federico Martinelli
Journal:  Front Genet       Date:  2022-02-16       Impact factor: 4.599

Review 7.  Moving Beyond DNA Sequence to Improve Plant Stress Responses.

Authors:  Faisal Saeed; Usman Khalid Chaudhry; Allah Bakhsh; Ali Raza; Yasir Saeed; Abhishek Bohra; Rajeev K Varshney
Journal:  Front Genet       Date:  2022-04-19       Impact factor: 4.772

  7 in total

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