Literature DB >> 33486429

Interactions of APOBEC3s with DNA and RNA.

Atanu Maiti1, Shurong Hou2, Celia A Schiffer3, Hiroshi Matsuo4.   

Abstract

APOBEC3 enzymes are key enzymes in our innate immune system regulating antiviral response in HIV and unfortunately adding diversity in cancer as they deaminate cytosine. Seven unique single and double domain APOBEC3s provide them with unique activity and specificity profiles for this deamination. Recent crystal and NMR structures of APOBEC3 complexes are unraveling the variety of epitopes involved in binding nucleic acids, including at the catalytic site, elsewhere on the catalytic domain and in the inactive N-terminal domain. The interplay between these diverse interactions is critical to uncovering the mechanisms by which APOBEC3s recognize and process their substrates.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2021        PMID: 33486429      PMCID: PMC8096667          DOI: 10.1016/j.sbi.2020.12.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  68 in total

1.  Induction of APOBEC3G ubiquitination and degradation by an HIV-1 Vif-Cul5-SCF complex.

Authors:  Xianghui Yu; Yunkai Yu; Bindong Liu; Kun Luo; Wei Kong; Panyong Mao; Xiao-Fang Yu
Journal:  Science       Date:  2003-10-16       Impact factor: 47.728

2.  Comparison of the differential context-dependence of DNA deamination by APOBEC enzymes: correlation with mutation spectra in vivo.

Authors:  Rupert C L Beale; Svend K Petersen-Mahrt; Ian N Watt; Reuben S Harris; Cristina Rada; Michael S Neuberger
Journal:  J Mol Biol       Date:  2004-03-26       Impact factor: 5.469

3.  Structural Analysis of the Active Site and DNA Binding of Human Cytidine Deaminase APOBEC3B.

Authors:  Shurong Hou; Tania V Silvas; Florian Leidner; Ellen A Nalivaika; Hiroshi Matsuo; Nese Kurt Yilmaz; Celia A Schiffer
Journal:  J Chem Theory Comput       Date:  2018-12-11       Impact factor: 6.006

4.  APOBEC3A is a potent inhibitor of adeno-associated virus and retrotransposons.

Authors:  Hui Chen; Caroline E Lilley; Qin Yu; Darwin V Lee; Jody Chou; Iñigo Narvaiza; Nathaniel R Landau; Matthew D Weitzman
Journal:  Curr Biol       Date:  2006-03-07       Impact factor: 10.834

5.  The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism.

Authors:  Nadine M Shaban; Ke Shi; Kate V Lauer; Michael A Carpenter; Christopher M Richards; Daniel Salamango; Jiayi Wang; Michael W Lopresti; Surajit Banerjee; Rena Levin-Klein; William L Brown; Hideki Aihara; Reuben S Harris
Journal:  Mol Cell       Date:  2017-12-28       Impact factor: 17.970

6.  Identification of amino acid residues in APOBEC3G required for regulation by human immunodeficiency virus type 1 Vif and Virion encapsidation.

Authors:  Hendrik Huthoff; Michael H Malim
Journal:  J Virol       Date:  2007-01-31       Impact factor: 5.103

7.  Structure of the Vif-binding domain of the antiviral enzyme APOBEC3G.

Authors:  Takahide Kouno; Elizabeth M Luengas; Megumi Shigematsu; Shivender M D Shandilya; JingYing Zhang; Luan Chen; Mayuko Hara; Celia A Schiffer; Reuben S Harris; Hiroshi Matsuo
Journal:  Nat Struct Mol Biol       Date:  2015-05-18       Impact factor: 15.369

8.  Crystal structures of APOBEC3G N-domain alone and its complex with DNA.

Authors:  Xiao Xiao; Shu-Xing Li; Hanjing Yang; Xiaojiang S Chen
Journal:  Nat Commun       Date:  2016-08-02       Impact factor: 14.919

9.  Conformational Switch Regulates the DNA Cytosine Deaminase Activity of Human APOBEC3B.

Authors:  Ke Shi; Özlem Demir; Michael A Carpenter; Jeff Wagner; Kayo Kurahashi; Reuben S Harris; Rommie E Amaro; Hideki Aihara
Journal:  Sci Rep       Date:  2017-12-12       Impact factor: 4.379

10.  Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA.

Authors:  Atanu Maiti; Wazo Myint; Tapan Kanai; Krista Delviks-Frankenberry; Christina Sierra Rodriguez; Vinay K Pathak; Celia A Schiffer; Hiroshi Matsuo
Journal:  Nat Commun       Date:  2018-06-25       Impact factor: 14.919

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  2 in total

1.  Cryo-EM structure of the EBV ribonucleotide reductase BORF2 and mechanism of APOBEC3B inhibition.

Authors:  Nadine M Shaban; Rui Yan; Ke Shi; Sofia N Moraes; Adam Z Cheng; Michael A Carpenter; Jason S McLellan; Zhiheng Yu; Reuben S Harris
Journal:  Sci Adv       Date:  2022-04-27       Impact factor: 14.957

2.  Exploring ABOBEC3A and APOBEC3B substrate specificity and their role in HPV positive head and neck cancer.

Authors:  Christina Papini; Zechen Wang; Shalley N Kudalkar; Travis Parke Schrank; Su Tang; Tomoaki Sasaki; Cory Wu; Brandon Tejada; Samantha J Ziegler; Yong Xiong; Natalia Issaeva; Wendell G Yarbrough; Karen S Anderson
Journal:  iScience       Date:  2022-09-05
  2 in total

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