| Literature DB >> 33486066 |
Brian S Alper1, Joanne Dehnbostel2, Muhammad Afzal3, Vignesh Subbian4, Andrey Soares5, Ilkka Kunnamo6, Khalid Shahin7, Robert C McClure8.
Abstract
The COVID-19 crisis led a group of scientific and informatics experts to accelerate development of an infrastructure for electronic data exchange for the identification, processing, and reporting of scientific findings. The Fast Healthcare Interoperability Resources (FHIR®) standard which is overcoming the interoperability problems in health information exchange was extended to evidence-based medicine (EBM) knowledge with the EBMonFHIR project. A 13-step Code System Development Protocol was created in September 2020 to support global development of terminologies for exchange of scientific evidence. For Step 1, we assembled expert working groups with 55 people from 26 countries by October 2020. For Step 2, we identified 23 commonly used tools and systems for which the first version of code systems will be developed. For Step 3, a total of 368 non-redundant concepts were drafted to become display terms for four code systems (Statistic Type, Statistic Model, Study Design, Risk of Bias). Steps 4 through 13 will guide ongoing development and maintenance of these terminologies for scientific exchange. When completed, the code systems will facilitate identifying, processing, and reporting research results and the reliability of those results. More efficient and detailed scientific communication will reduce cost and burden and improve health outcomes, quality of life, and patient, caregiver, and healthcare professional satisfaction. We hope the achievements reached thus far will outlive COVID-19 and provide an infrastructure to make science computable for future generations. Anyone may join the effort at https://www.gps.health/covid19_knowledge_accelerator.html.Entities:
Keywords: Code system; Evidence-based medicine; Ontology; Research literature; Science communication; Terminology
Mesh:
Year: 2021 PMID: 33486066 PMCID: PMC9387176 DOI: 10.1016/j.jbi.2021.103685
Source DB: PubMed Journal: J Biomed Inform ISSN: 1532-0464 Impact factor: 8.000
Fig. 1Code System Development Protocol Flow Diagram.
Demographics of 55 Members of Expert Working Groups.
| Country (total 26) | Australia (1), Bangladesh (2), Brazil (2), Canada (5), Costa Rica (1), Czech Republic (1), Egypt (1), Finland (2), France (1), Ghana (1), Greece (2), India (2), Ireland (1), Italy (2), Japan (1), Lebanon (1), Malaysia (1), Nigeria (4), Peru (1), Romania (2), South Africa (1), South Korea (1), Sri Lanka (1), Switzerland (2), United Kingdom (2), United States (14) |
|---|---|
| Type of expertise*, n (%) | |
| Researcher | 42 (76%) |
| Evaluate scientific concepts | 34 (62%) |
| Systematic Reviewer | 32 (58%) |
| Statistician | 23 (42%) |
| Guideline developer | 14 (25%) |
| Developer of reporting systems | 12 (22%) |
| Learner | 10 (18%) |
| Software engineer/Informatics specialist | 10 (18%) |
| Write-in responses | Librarian (3), Teacher of medical literature evaluation (2), Clinician/health professional, Terminologist, Standards developer, Qualitative researcher, Book author |
| Age, n (%) | |
| 18–25 years | 2 (4%) |
| 26–40 years | 16 (29%) |
| 41–55 years | 21 (38%) |
| 56–69 years | 13 (24%) |
| 70+ years | 1 (2%) |
| Not shared | 2 (4%) |
| Sex, n (%) | |
| Female | 18 (33%) |
| Male | 36 (65%) |
| Not shared | 2 (2%) |
| Race/ethnicity*, n (%) | |
| Asian | 11 (20%) |
| Black | 6 (11%) |
| Hispanic/Latino | 6 (7%) |
| Indigenous | 2 (4%) |
| White | 27 (49%) |
| Not stated | 7 (13%) |
*More than one selection may apply to each person.
Step 2 and Step 3 Results to Inform Code System Development.
| Statistic Type | StatisticType code system defined by the FHIR project StatisticAttributeEstimateType code system defined by the FHIR project ObservationMethodAggregate value set from HL7 V3 ObservationMethod code system Cochrane Review Manager (RevMan) | 88 |
| Statistic Model | StatisticModelCode code system defined by the FHIR project StatisticModelMethod code system defined by the FHIR project | 53 |
| Study Design | StudyType code system defined by the FHIR project ResearchStudyPhase code system defined by the FHIR project MEDLINE MeSH Headings for Study Characteristics [Publication Type] ClinicalTrials.gov study type classifiers ResearchStudy-StudyDesign code system used in the database of Genotypes and Phenotypes (dbGaP) | 57 |
| Risk of Bias | StatisticCertaintySubcomponentType code system defined by the FHIR project StatisticCertaintySubcomponentRating code system defined by the FHIR project Cochrane Collaboration’s Risk of Bias tool (ROB-1) Revised Risk of Bias Tool (ROB-2) Risk Of Bias In Non-randomised Studies - of Interventions (ROBINS-I) Newcastle-Ottawa Scale for non-randomized studies Risk of Bias in Systematic Reviews (ROBIS) Prediction Model Risk of Bias Assessment Tool (PROBAST) Quality in Prognosis Studies (QUIPS) Quality Assessment of Diagnostic Accuracy Studies (QUADAS) Mixed Methods Assessment Tool (MMAT) Cochrane Handbook Chapter 9 (reporting styles for risk of bias tables) | 170 |
Example of coding element.
| System | http://build.fhir.org/codesystem-study-type.html |
| Code | RCT |
| Display | randomized trial |
Expert Working Group Contributors to the Code System Development Concept Lists.
| Gaelen P. Adam | United States | 1 | 1 | ||
| Muhammad Afzal | South Korea | 3 | 3 | ||
| Tanvir Ahammed | Bangladesh | 1 | 1 | 1 | 1 |
| Brian S. Alper | United States | 3 | 3 | 3 | 3 |
| Eric H. Au | Australia | 1 | 1 | 1 | 1 |
| Phillip O. Awodutire | Nigeria | 2 | 2 | ||
| Sébastien Bailly | France | 1 | 1 | 1 | 1 |
| Yusentha Balakrishna | South Africa | 1 | 1 | 1 | |
| Sorana D. Bolboacă | Romania | 1 | 3 | 3 | |
| Marek Brabec | Czech Republic | 1 | 1 | ||
| Stacy B. Brody | United States | 3 | |||
| Comes Calin-Adrian | Romania | 1 | 1 | ||
| Rachel Couban | Canada | 2 | |||
| Keitty Regina C. de Andrade | Brazil | 1 | 1 | 1 | 1 |
| Joanne Dehnbostel | United States | 3 | 3 | 3 | 3 |
| Sandra Dimitri | Egypt | 1 | |||
| Marc L. Duteau | Canada | 2 | 2 | ||
| Zbys Fedorowicz | United Kingdom | 1 | 1 | ||
| Emilia J. Flores | United States | 1 | 1 | ||
| Isaac Fwemba | Ghana | 1 | 1 | 1 | 1 |
| Abhay M. Gaidhane | India | 1 | |||
| Eric M. Harvey | United States | 3 | 2 | ||
| Danielle Johnson | United Kingdom | 1 | 1 | ||
| Samer A. Kharroubi | Lebanon | 1 | 1 | ||
| Bhagvan Kommadi | India | 3 | 3 | 3 | 3 |
| Polychronis Kostoulas | Greece | 1 | |||
| Evangelos Kritsotakis | Greece | 3 | 3 | ||
| Ilkka Kunnamo | Finland | 1 | 1 | ||
| Louis E. Leff | United States | 2 | 2 | ||
| Harold Lehmann | United States | 1 | 1 | 1 | 1 |
| Jesus Lopez-Alcalde | Switzerland | 1 | 1 | ||
| Robert C. McClure | United States | 2 | 2 | 2 | 2 |
| Matthew D. Mitchell | United States | 1 | 1 | ||
| Tamara Navarro-Ruan | Canada | 3 | 1 | ||
| Pentti Nieminen | Finland | 1 | 1 | ||
| Akaninyene Patrick Obot | Nigeria | 1 | 1 | 1 | |
| Aloysius Odii | Nigeria | 1 | 1 | 1 | |
| Cheow Peng Ooi | Malaysia | 1 | |||
| Alejandro Piscoya | Peru | 1 | 1 | 1 | |
| Vivek Podder | Bangladesh | 1 | 1 | ||
| K.M. Saif-UR- Rahman | Japan | 1 | 1 | ||
| Karen A. Robinson | United States | 1 | 1 | 1 | 1 |
| Paola Rosati | Italy | 1 | 1 | ||
| Carolyn M. Rutter | United States | 1 | 1 | 1 | 1 |
| Khalid S. Shahin | United States | 3 | 3 | 3 | 3 |
| Roshini Sooriyarachchi | Sri Lanka | 1 | 1 | ||
| Vignesh Subbian | United States | 3 | 2 | 1 | 1 |
| Lehana Thabane | Canada | 3 | 3 | 3 | 3 |
| Mario Tristan | Costa Rica | 1 | 1 | 1 | 1 |
| Chidi Ugwu | Nigeria | 1 | 1 | ||
| Linlu Zhao | Canada | 1 | |||
| Name Withheld | Brazil | 1 | 1 | ||
| Name Withheld | Ireland | 1 | 1 | ||
| Name Withheld | Italy | 1 | 1 | 1 | 1 |
| Name Withheld | Switzerland | 1 | 1 | ||
Participants in the COVID-19 Knowledge Accelerator (COKA) Initiative.
| Gaelen P. Adam | Brown University | ||||||||||
| Muhammad Afzal | Sejong University | ||||||||||
| Eitan Agai | |||||||||||
| Brian S. Alper | |||||||||||
| Ray Alsheikh | Johns Hopkins University | ||||||||||
| Stacy B. Brody | George Washington University, Librarian Reserve Corps | ||||||||||
| Mary Butler | University of Minnesota | ||||||||||
| Comes Calin-Adrian | |||||||||||
| Rachel Couban | McMaster University | ||||||||||
| Joanne Dehnbostel | |||||||||||
| Marc L. Duteau | |||||||||||
| Zbys Fedorowicz | |||||||||||
| Gilbert, Mike | |||||||||||
| Eric M. Harvey | Swedish Health Services, University of Washington | ||||||||||
| Sharon Hibay | |||||||||||
| Alfonso Iorio | McMaster University | ||||||||||
| Jens Jap | |||||||||||
| Bhagvan Kommadi | |||||||||||
| Ilkka Kunnamo | |||||||||||
| Pawel Kunstman | |||||||||||
| Eddy Lang | |||||||||||
| Harold Lehmann | Johns Hopkins University | ||||||||||
| Sara Loree | |||||||||||
| Martin Mayer | EBSCO | ||||||||||
| Robert C. McClure | |||||||||||
| Tamara Navarro-Ruan | McMaster University | ||||||||||
| Jerry Osheroff | |||||||||||
| Amy Price | Stanford University | ||||||||||
| Joshua Richardson | |||||||||||
| Karen A. Robinson | Johns Hopkins University | ||||||||||
| Lisa Schilling | University of Colorado | ||||||||||
| Birol Senturk | |||||||||||
| Khalid S. Shahin | |||||||||||
| Andrey Soares | University of Colorado | ||||||||||
| Ian Saldanha | |||||||||||
| Vignesh Subbian | University of Arizona | ||||||||||
| Jennifer Tetzlaff | |||||||||||
| Lehana Thabane | McMaster University | ||||||||||
| Mario Tristan | |||||||||||
| Danny van Leeuwen | |||||||||||
| Jody Wachs | Vizient |
Bold type used for organization-level participation.
A Project Management Group
B Statistic Type Code System Development Steering Group
C Statistic Model Code System Development Steering Group
D Study Design Code System Development Steering Group
E Risk of Bias Code System Development Steering Group
F Content Citation and Classification Tools Development Work Group
G Evidence Evaluation and Reporting Tools Development Work Group
H Systematic Meta-Review Project Group
I Knowledge Ecosystem Liaison Work Group
J Communications Work Group