Literature DB >> 33483559

Spatiotemporal clustering and Random Forest models to identify risk factors of African swine fever outbreak in Romania in 2018-2019.

Mathieu Andraud1, Stéphanie Bougeard2, Theodora Chesnoiu3, Nicolas Rose2.   

Abstract

African swine fever (ASF) has affected Romania since July 2017, with considerable economic and social consequences, despite the implementation of control measures mainly based on stamping out of infected pig populations. On the basis of the 2973 cumulative recorded cases up to September 2019 among wild boars and domestic pigs, analysis of the epidemiological characteristics could help to identify the factors favoring the persistence and spread of ASF. A statistical framework, based on a random forest methodology, was therefore developed to assess the spatiotemporal features of the epidemics and their relationships with environmental, human, and agricultural factors. The landscape of Romania was associated with the infection dynamics, particularly concerning forested and wetland areas. Waterways were also identified as a pivotal factor, raising questions about possible waterborne transmission since these waterways are often used as a water supply for backyard holdings. However, human activity was clearly identified as the main risk factor for the spread of ASF. Although the situation in Romania cannot be directly transposed to intensive pig farming countries, the findings of this study highlight the need for strict biosecurity measures on farms, and during transportation, to avoid ASF transmission at large geographic and temporal scales.

Entities:  

Year:  2021        PMID: 33483559     DOI: 10.1038/s41598-021-81329-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  18 in total

1.  Pig fever sweeps across Russia.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2012-08-30       Impact factor: 49.962

Review 2.  Gaps in African swine fever: Analysis and priorities.

Authors:  M Arias; C Jurado; C Gallardo; J Fernández-Pinero; J M Sánchez-Vizcaíno
Journal:  Transbound Emerg Dis       Date:  2017-09-22       Impact factor: 5.005

Review 3.  African swine fever in the Russian Federation: spatio-temporal analysis and epidemiological overview.

Authors:  A S Oganesyan; O N Petrova; F I Korennoy; N S Bardina; A E Gogin; S A Dudnikov
Journal:  Virus Res       Date:  2012-12-27       Impact factor: 3.303

4.  Modelling African swine fever presence and reported abundance in the Russian Federation using national surveillance data from 2007 to 2014.

Authors:  Timothée Vergne; Fedor Korennoy; Lisa Combelles; Andrey Gogin; Dirk U Pfeiffer
Journal:  Spat Spatiotemporal Epidemiol       Date:  2016-06-16

5.  Experimental Infection of Domestic Pigs with African Swine Fever Virus Lithuania 2014 Genotype II Field Isolate.

Authors:  C Gallardo; A Soler; R Nieto; C Cano; V Pelayo; M A Sánchez; G Pridotkas; J Fernandez-Pinero; V Briones; M Arias
Journal:  Transbound Emerg Dis       Date:  2015-03-22       Impact factor: 5.005

6.  Inferring within-herd transmission parameters for African swine fever virus using mortality data from outbreaks in the Russian Federation.

Authors:  C Guinat; T Porphyre; A Gogin; L Dixon; D U Pfeiffer; S Gubbins
Journal:  Transbound Emerg Dis       Date:  2017-11-09       Impact factor: 5.005

Review 7.  Epidemiological considerations on African swine fever in Europe 2014-2018.

Authors:  Erika Chenais; Klaus Depner; Vittorio Guberti; Klaas Dietze; Arvo Viltrop; Karl Ståhl
Journal:  Porcine Health Manag       Date:  2019-01-09

8.  African swine fever virus isolate, Georgia, 2007.

Authors:  Rebecca J Rowlands; Vincent Michaud; Livio Heath; Geoff Hutchings; Chris Oura; Wilna Vosloo; Rahana Dwarka; Tinatin Onashvili; Emmanuel Albina; Linda K Dixon
Journal:  Emerg Infect Dis       Date:  2008-12       Impact factor: 6.883

9.  African Swine Fever Epidemic, Poland, 2014-2015.

Authors:  Krzysztof Śmietanka; Grzegorz Woźniakowski; Edyta Kozak; Krzysztof Niemczuk; Magdalena Frączyk; Łukasz Bocian; Andrzej Kowalczyk; Zygmunt Pejsak
Journal:  Emerg Infect Dis       Date:  2016-07       Impact factor: 6.883

Review 10.  Relevant Measures to Prevent the Spread of African Swine Fever in the European Union Domestic Pig Sector.

Authors:  Cristina Jurado; Marta Martínez-Avilés; Ana De La Torre; Marina Štukelj; Helena Cardoso de Carvalho Ferreira; Monica Cerioli; José Manuel Sánchez-Vizcaíno; Silvia Bellini
Journal:  Front Vet Sci       Date:  2018-04-16
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  4 in total

1.  Epidemiological analyses of African swine fever in the European Union: (September 2020 to August 2021).

Authors:  Joaquín Vicente Baños; Anette Boklund; Andrey Gogin; Christian Gortázar; Vittorio Guberti; Georgina Helyes; Maria Kantere; Daniela Korytarova; Annick Linden; Marius Masiulis; Aleksandra Miteva; Ioana Neghirla; Edvins Oļševskis; Sasa Ostojic; Satran Petr; Christoph Staubach; Hans-Hermann Thulke; Arvo Viltrop; Grzegorz Wozniakowski; Alessandro Broglia; José Abrahantes Cortiñas; Sofie Dhollander; Lina Mur; Alexandra Papanikolaou; Yves Van der Stede; Gabriele Zancanaro; Karl Ståhl
Journal:  EFSA J       Date:  2022-05-04

2.  Estimation of the probability risks of African swine fever outbreaks using the maximum entropy method in North Sumatra Province, Indonesia.

Authors:  Roza Azizah Primatika; Etih Sudarnika; Bambang Sumiarto; Chaerul Basri
Journal:  Vet World       Date:  2022-07-26

3.  Linear and Machine Learning modelling for spatiotemporal disease predictions: Force-of-Infection of Chagas disease.

Authors:  Julia Ledien; Zulma M Cucunubá; Gabriel Parra-Henao; Eliana Rodríguez-Monguí; Andrew P Dobson; Susana B Adamo; María-Gloria Basáñez; Pierre Nouvellet
Journal:  PLoS Negl Trop Dis       Date:  2022-07-19

4.  What Is the Real Influence of Climatic and Environmental Factors in the Outbreaks of African Swine Fever?

Authors:  Andrei Ungur; Cristina Daniela Cazan; Luciana-Cătălina Panait; Mircea Coroian; Cornel Cătoi
Journal:  Animals (Basel)       Date:  2022-03-19       Impact factor: 2.752

  4 in total

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