Literature DB >> 33480723

Modeling of motional EPR spectra using hindered Brownian rotational diffusion and the stochastic Liouville equation.

Jeremy Lehner1, Stefan Stoll1.   

Abstract

Electron paramagnetic resonance (EPR) spectra of molecular spin centers undergoing reorientational motion are commonly simulated using the stochastic Liouville equation (SLE) with a rigid-body hindered Brownian diffusion model. Current SLE theory applies to specific spin systems such as nitroxides and to high-symmetry orientational potentials. In this work, we extend the SLE theory to arbitrary spin systems with any number of spins and any type of spin Hamiltonian interaction term, as well as to arbitrarily complex orientational potentials. We also examine the limited accuracy of the frequency-to-field conversion used to obtain field-swept EPR spectra and present a more accurate approach. The extensions allow for the simulation of EPR spectra of all types of spin labels (nitroxides, copper2+, and gadolinium3+) attached to proteins in low-symmetry environments.

Entities:  

Year:  2020        PMID: 33480723      PMCID: PMC7051866          DOI: 10.1063/1.5139935

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

1.  Interpretation of cw-ESR spectra of p-methyl-thio-phenyl-nitronyl nitroxide in a nematic liquid crystalline phase.

Authors:  Alberto Collauto; Mirco Zerbetto; Marina Brustolon; Antonino Polimeno; Andrea Caneschi; Dante Gatteschi
Journal:  Phys Chem Chem Phys       Date:  2012-01-27       Impact factor: 3.676

2.  Ab initio modeling of CW-ESR spectra of the double spin labeled peptide Fmoc-(Aib-Aib-TOAC)2-Aib-OMe in acetonitrile.

Authors:  Mirco Zerbetto; Silvia Carlotto; Antonino Polimeno; Carlo Corvaja; Lorenzo Franco; Claudio Toniolo; Fernando Formaggio; Vincenzo Barone; Paola Cimino
Journal:  J Phys Chem B       Date:  2007-02-21       Impact factor: 2.991

3.  Structural determinants of nitroxide motion in spin-labeled proteins: tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme.

Authors:  Zhefeng Guo; Duilio Cascio; Kálmán Hideg; Támás Kálái; Wayne L Hubbell
Journal:  Protein Sci       Date:  2007-05-01       Impact factor: 6.725

4.  Simulating electron spin resonance spectra of nitroxide spin labels from molecular dynamics and stochastic trajectories.

Authors:  Deniz Sezer; Jack H Freed; Benoît Roux
Journal:  J Chem Phys       Date:  2008-04-28       Impact factor: 3.488

5.  Joint analysis of ESR lineshapes and 1H NMRD profiles of DOTA-Gd derivatives by means of the slow motion theory.

Authors:  D Kruk; J Kowalewski; D S Tipikin; S Tipikin; J H Freed; M Mościcki; A Mielczarek; M Port
Journal:  J Chem Phys       Date:  2011-01-14       Impact factor: 3.488

6.  Trajectory-Based Simulation of EPR Spectra: Models of Rotational Motion for Spin Labels on Proteins.

Authors:  Peter D Martin; Bengt Svensson; David D Thomas; Stefan Stoll
Journal:  J Phys Chem B       Date:  2019-11-21       Impact factor: 2.991

7.  Stochastic modeling of CW-ESR spectroscopy of [60]fulleropyrrolidine bisadducts with nitroxide probes.

Authors:  Antonino Polimeno; Mirco Zerbetto; Lorenzo Franco; Michele Maggini; Carlo Corvaja
Journal:  J Am Chem Soc       Date:  2006-04-12       Impact factor: 15.419

8.  Using Markov models to simulate electron spin resonance spectra from molecular dynamics trajectories.

Authors:  Deniz Sezer; Jack H Freed; Benoit Roux
Journal:  J Phys Chem B       Date:  2008-08-12       Impact factor: 2.991

9.  Simulation of slow-motion CW EPR spectrum using stochastic Liouville equation for an electron spin coupled to two nuclei with arbitrary spins: matrix elements of the Liouville superoperator.

Authors:  Sushil K Misra
Journal:  J Magn Reson       Date:  2007-08-14       Impact factor: 2.229

10.  Integrated Computational Approach to the Electron Paramagnetic Resonance Characterization of Rigid 310-Helical Peptides with TOAC Nitroxide Spin Labels.

Authors:  Marco Gerolin; Mirco Zerbetto; Alessandro Moretto; Fernando Formaggio; Claudio Toniolo; Martin van Son; Maryam Hashemi Shabestari; Martina Huber; Paolo Calligari; Antonino Polimeno
Journal:  J Phys Chem B       Date:  2017-04-19       Impact factor: 2.991

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  4 in total

1.  NMR Spin Relaxation Theory of Biomolecules Undergoing Highly Asymmetric Exchange with Large Interaction Partners.

Authors:  Gregory Jameson; Rafael Brüschweiler
Journal:  J Chem Theory Comput       Date:  2021-03-22       Impact factor: 6.006

2.  Microsecond dynamics in proteins by two-dimensional ESR. II. Addressing computational challenges.

Authors:  Pranav Gupta; Kevin Chaudhari; Jack H Freed
Journal:  J Chem Phys       Date:  2021-02-28       Impact factor: 3.488

3.  A Dual Fluorescence-Spin Label Probe for Visualization and Quantification of Target Molecules in Tissue by Multiplexed FLIM-EPR Spectroscopy.

Authors:  Pin Dong; Johannes Stellmacher; Lydia M Bouchet; Marius Nieke; Amit Kumar; Ernesto R Osorio-Blanco; Gregor Nagel; Silke B Lohan; Christian Teutloff; Alexa Patzelt; Monika Schäfer-Korting; Marcelo Calderón; Martina C Meinke; Ulrike Alexiev
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-26       Impact factor: 15.336

4.  High-Pressure ESR Spectroscopy: On the Rotational Motion of Spin Probes in Pressurized Ionic Liquids.

Authors:  Boryana Y Mladenova Kattnig; Daniel R Kattnig; Guenter Grampp
Journal:  J Phys Chem B       Date:  2022-01-24       Impact factor: 2.991

  4 in total

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