Literature DB >> 33479300

Population genetics and forensic utility of 23 autosomal PowerPlex Fusion 6C STR loci in the Kuwaiti population.

Mahdi Haidar1,2, Fatimah A Abbas3,4, Hussain Alsaleh3,4, Penelope R Haddrill3.   

Abstract

This study evaluates the forensic utility of 23 autosomal short tandem repeat markers in 400 samples from the Kuwaiti population, of which four markers (D10S1248, D22S1045, D2S441 and SE33) are reported for the first time for Kuwait. All the markers were shown to exhibit no deviation from Hardy-Weinberg equilibrium, nor any linkage disequilibrium between and within loci, indicating that these loci are inherited independently, and their allele frequencies can be used to estimate match probabilities in the Kuwaiti population. The low combined match probability of 7.37 × 10-30 and the high paternity indices generated by these loci demonstrate the usefulness of the PowerPlex Fusion 6C kit for human identification in this population, as well as to strengthen the power of paternity testing. Off-ladder alleles were seen at several loci, and these were identified by examining their underlying nucleotide sequences. Principal component analysis (PCA) and STRUCTURE showed no genetic structure within the Kuwaiti population. However, PCA revealed a correlation between geographic and genetic distance. Finally, phylogenetic trees demonstrated a close relationship between Kuwaitis and Middle Easterners at a global level, and a recent common ancestry for Kuwait with its northern neighbours of Iraq and Iran, at a regional level.

Entities:  

Year:  2021        PMID: 33479300      PMCID: PMC7820400          DOI: 10.1038/s41598-021-81425-y

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  33 in total

1.  Analysis of global variability in 15 established and 5 new European Standard Set (ESS) STRs using the CEPH human genome diversity panel.

Authors:  C Phillips; L Fernandez-Formoso; M Garcia-Magariños; L Porras; T Tvedebrink; J Amigo; M Fondevila; A Gomez-Tato; J Alvarez-Dios; A Freire-Aradas; A Gomez-Carballa; A Mosquera-Miguel; A Carracedo; M V Lareu
Journal:  Forensic Sci Int Genet       Date:  2010-03-05       Impact factor: 4.882

2.  Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.

Authors:  G Evanno; S Regnaut; J Goudet
Journal:  Mol Ecol       Date:  2005-07       Impact factor: 6.185

3.  STR data for the AmpFlSTR Identifiler loci in Kuwaiti population.

Authors:  Mohammad Alenizi; William Goodwin; Samar Ismael; Sibte Hadi
Journal:  Leg Med (Tokyo)       Date:  2008-07-25       Impact factor: 1.376

4.  Selection and implementation of expanded CODIS core loci in the United States.

Authors:  Douglas R Hares
Journal:  Forensic Sci Int Genet       Date:  2015-03-12       Impact factor: 4.882

5.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

6.  Inferring weak population structure with the assistance of sample group information.

Authors:  Melissa J Hubisz; Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Mol Ecol Resour       Date:  2009-04-01       Impact factor: 7.090

7.  Kuwaiti population subgroup of nomadic Bedouin ancestry-Whole genome sequence and analysis.

Authors:  Sumi Elsa John; Gaurav Thareja; Prashantha Hebbar; Kazem Behbehani; Thangavel Alphonse Thanaraj; Osama Alsmadi
Journal:  Genom Data       Date:  2014-12-18

8.  Forensic genetic analysis of population of Madhya Pradesh with PowerPlex Fusion 6C Multiplex System.

Authors:  Shivani Dixit; Pankaj Shrivastava; R K Kumawat; Kamlesh Kaitholia; Hirak Ranjan Dash; Harsh Sharma; Gyaneshwer Choubey
Journal:  Int J Legal Med       Date:  2019-02-14       Impact factor: 2.686

9.  Population genetic data of the 21 autosomal STRs included in GlobalFiler kit of a population sample from the Kingdom of Bahrain.

Authors:  Noora R Al-Snan; Safia Messaoudi; Saranya R Babu; Moiz Bakhiet
Journal:  PLoS One       Date:  2019-08-15       Impact factor: 3.240

10.  Genetic substructure of Kuwaiti population reveals migration history.

Authors:  Osama Alsmadi; Gaurav Thareja; Fadi Alkayal; Ramakrishnan Rajagopalan; Sumi Elsa John; Prashantha Hebbar; Kazem Behbehani; Thangavel Alphonse Thanaraj
Journal:  PLoS One       Date:  2013-09-16       Impact factor: 3.240

View more
  1 in total

1.  Genetic Structure and Forensic Utility of 23 Autosomal STRs of the Ethnic Lao Groups From Laos and Thailand.

Authors:  Khaing Zin Than; Kanha Muisuk; Wipada Woravatin; Chatmongkon Suwannapoom; Metawee Srikummool; Suparat Srithawong; Sengvilay Lorphengsy; Wibhu Kutanan
Journal:  Front Genet       Date:  2022-07-07       Impact factor: 4.772

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.