Literature DB >> 33478487

DNA methyltransferase 3a mediates developmental thermal plasticity.

Isabella Loughland1, Alexander Little2, Frank Seebacher3.   

Abstract

BACKGROUND: Thermal plasticity is pivotal for evolution in changing climates and in mediating resilience to its potentially negative effects. The efficacy to respond to environmental change depends on underlying mechanisms. DNA methylation induced by DNA methyltransferase 3 enzymes in the germline or during early embryonic development may be correlated with responses to environmental change. This developmental plasticity can interact with reversible acclimation within adult organisms, which would increase the speed of response and could alleviate potential mismatches between parental or early embryonic environments and those experienced at later life stages. Our aim was to determine whether there is a causative relationship between DNMT3 enzyme and developmental thermal plasticity and whether either or both interact with short-term acclimation to alter fitness and thermal responses in zebrafish (Danio rerio).
RESULTS: We developed a novel DNMT3a knock-out model to show that sequential knock-out of DNA methyltransferase 3a isoforms (DNMT3aa-/- and DNMT3aa-/-ab-/-) additively decreased survival and increased deformities when cold developmental temperatures in zebrafish offspring mismatched warm temperatures experienced by parents. Interestingly, short-term cold acclimation of parents before breeding rescued DNMT3a knock-out offspring by restoring survival at cold temperatures. DNMT3a knock-out genotype interacted with developmental temperatures to modify thermal performance curves in offspring, where at least one DNMT3a isoform was necessary to buffer locomotion from increasing temperatures. The thermal sensitivity of citrate synthase activity, an indicator of mitochondrial density, was less severely affected by DNMT3a knock-out, but there was nonetheless a significant interaction between genotype and developmental temperatures.
CONCLUSIONS: Our results show that DNMT3a regulates developmental thermal plasticity and that the phenotypic effects of different DNMT3a isoforms are additive. However, DNMT3a interacts with other mechanisms, such as histone (de)acetylation, induced during short-term acclimation to buffer phenotypes from environmental change. Interactions between these mechanisms make phenotypic compensation for climate change more efficient and make it less likely that thermal plasticity incurs a cost resulting from environmental mismatches.

Entities:  

Keywords:  Acclimation; Cost of plasticity; DNA methylation; Epigenetics; Locomotor performance; Metabolism; Transgenerational plasticity; Zebrafish

Year:  2021        PMID: 33478487      PMCID: PMC7819298          DOI: 10.1186/s12915-020-00942-w

Source DB:  PubMed          Journal:  BMC Biol        ISSN: 1741-7007            Impact factor:   7.431


  33 in total

Review 1.  Linking DNA methylation and histone modification: patterns and paradigms.

Authors:  Howard Cedar; Yehudit Bergman
Journal:  Nat Rev Genet       Date:  2009-05       Impact factor: 53.242

Review 2.  The biology of developmental plasticity and the Predictive Adaptive Response hypothesis.

Authors:  Patrick Bateson; Peter Gluckman; Mark Hanson
Journal:  J Physiol       Date:  2014-06-01       Impact factor: 5.182

Review 3.  Can we predict ectotherm responses to climate change using thermal performance curves and body temperatures?

Authors:  Brent J Sinclair; Katie E Marshall; Mary A Sewell; Danielle L Levesque; Christopher S Willett; Stine Slotsbo; Yunwei Dong; Christopher D G Harley; David J Marshall; Brian S Helmuth; Raymond B Huey
Journal:  Ecol Lett       Date:  2016-09-25       Impact factor: 9.492

Review 4.  Epigenetics and the maintenance of developmental plasticity: extending the signalling theory framework.

Authors:  Zachary M Laubach; Wei Perng; Dana C Dolinoy; Christopher D Faulk; Kay E Holekamp; Thomas Getty
Journal:  Biol Rev Camb Philos Soc       Date:  2018-01-21

5.  Molecular evolution of zebrafish dnmt3 genes and thermal plasticity of their expression during embryonic development.

Authors:  Catarina Campos; Luisa M P Valente; Jorge M O Fernandes
Journal:  Gene       Date:  2012-03-17       Impact factor: 3.688

6.  A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish.

Authors:  Gaurav K Varshney; Blake Carrington; Wuhong Pei; Kevin Bishop; Zelin Chen; Chunxin Fan; Lisha Xu; Marypat Jones; Matthew C LaFave; Johan Ledin; Raman Sood; Shawn M Burgess
Journal:  Nat Protoc       Date:  2016-10-27       Impact factor: 13.491

7.  Thyroid hormone regulates muscle function during cold acclimation in zebrafish (Danio rerio).

Authors:  Alexander G Little; Frank Seebacher
Journal:  J Exp Biol       Date:  2013-09-15       Impact factor: 3.312

Review 8.  Constraints on the evolution of phenotypic plasticity: limits and costs of phenotype and plasticity.

Authors:  C J Murren; J R Auld; H Callahan; C K Ghalambor; C A Handelsman; M A Heskel; J G Kingsolver; H J Maclean; J Masel; H Maughan; D W Pfennig; R A Relyea; S Seiter; E Snell-Rood; U K Steiner; C D Schlichting
Journal:  Heredity (Edinb)       Date:  2015-02-18       Impact factor: 3.821

9.  Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms.

Authors:  Linfeng Gao; Max Emperle; Yiran Guo; Sara A Grimm; Wendan Ren; Sabrina Adam; Hidetaka Uryu; Zhi-Min Zhang; Dongliang Chen; Jiekai Yin; Michael Dukatz; Hiwot Anteneh; Renata Z Jurkowska; Jiuwei Lu; Yinsheng Wang; Pavel Bashtrykov; Paul A Wade; Gang Greg Wang; Albert Jeltsch; Jikui Song
Journal:  Nat Commun       Date:  2020-07-03       Impact factor: 14.919

10.  Histone deacetylase activity mediates thermal plasticity in zebrafish (Danio rerio).

Authors:  Frank Seebacher; Alec I M Simmonds
Journal:  Sci Rep       Date:  2019-06-03       Impact factor: 4.379

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  1 in total

1.  How does epigenetics influence the course of evolution?

Authors:  Alyson Ashe; Vincent Colot; Benjamin P Oldroyd
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-19       Impact factor: 6.671

  1 in total

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