Literature DB >> 33477903

Dynamics of Ion Channels via Non-Hermitian Quantum Mechanics.

Tobias Gulden1, Alex Kamenev2,3.   

Abstract

We study dynamics and thermodynamics of ion transport in narrow, water-filled channels, considered as effective 1D Coulomb systems. The long range nature of the inter-ion interactions comes about due to the dielectric constants mismatch between the water and the surrounding medium, confining the electric filed to stay mostly within the water-filled channel. Statistical mechanics of such Coulomb systems is dominated by entropic effects which may be accurately accounted for by mapping onto an effective quantum mechanics. In presence of multivalent ions the corresponding quantum mechanics appears to be non-Hermitian. In this review we discuss a framework for semiclassical calculations for the effective non-Hermitian Hamiltonians. Non-Hermiticity elevates WKB action integrals from the real line to closed cycles on a complex Riemann surfaces where direct calculations are not attainable. We circumvent this issue by applying tools from algebraic topology, such as the Picard-Fuchs equation. We discuss how its solutions relate to the thermodynamics and correlation functions of multivalent solutions within narrow, water-filled channels.

Entities:  

Keywords:  algebraic topology; ion transport; nanopores; non-Hermitian Hamiltonians; semiclassical methods; statistical mechanics

Year:  2021        PMID: 33477903      PMCID: PMC7833378          DOI: 10.3390/e23010125

Source DB:  PubMed          Journal:  Entropy (Basel)        ISSN: 1099-4300            Impact factor:   2.524


  15 in total

1.  Conductance of ion channels and nanopores with charged walls: a toy model.

Authors:  J Zhang; A Kamenev; B I Shklovskii
Journal:  Phys Rev Lett       Date:  2005-09-26       Impact factor: 9.161

2.  Ion exchange phase transitions in water-filled channels with charged walls.

Authors:  J Zhang; A Kamenev; B I Shklovskii
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-05-19

3.  Phase diagram of water in carbon nanotubes.

Authors:  Daisuke Takaiwa; Itaru Hatano; Kenichiro Koga; Hideki Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-27       Impact factor: 11.205

Review 4.  Membrane injury by pore-forming proteins.

Authors:  Mirko Bischofberger; Manuel R Gonzalez; F Gisou van der Goot
Journal:  Curr Opin Cell Biol       Date:  2009-05-11       Impact factor: 8.382

Review 5.  Role of pore-forming toxins in bacterial infectious diseases.

Authors:  Ferdinand C O Los; Tara M Randis; Raffi V Aroian; Adam J Ratner
Journal:  Microbiol Mol Biol Rev       Date:  2013-06       Impact factor: 11.056

6.  Electrokinetic transport through nanochannels.

Authors:  Saeid Movahed; Dongqing Li
Journal:  Electrophoresis       Date:  2011-05-03       Impact factor: 3.535

7.  Free-Standing Kinked Silicon Nanowires for Probing Inter- and Intracellular Force Dynamics.

Authors:  John F Zimmerman; Graeme F Murray; Yucai Wang; John M Jumper; Jotham R Austin; Bozhi Tian
Journal:  Nano Lett       Date:  2015-07-22       Impact factor: 11.189

8.  Ionic Coulomb blockade as a fractional Wien effect.

Authors:  Nikita Kavokine; Sophie Marbach; Alessandro Siria; Lydéric Bocquet
Journal:  Nat Nanotechnol       Date:  2019-04-08       Impact factor: 39.213

9.  Energy of an ion crossing a low dielectric membrane: solutions to four relevant electrostatic problems.

Authors:  A Parsegian
Journal:  Nature       Date:  1969-03-01       Impact factor: 49.962

10.  Water in Carbon Nanotubes: The Peculiar Hydrogen Bond Network Revealed by Infrared Spectroscopy.

Authors:  Simona Dalla Bernardina; Erwan Paineau; Jean-Blaise Brubach; Patrick Judeinstein; Stéphan Rouzière; Pascale Launois; Pascale Roy
Journal:  J Am Chem Soc       Date:  2016-08-12       Impact factor: 15.419

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  1 in total

1.  Introduction to the Physics of Ionic Conduction in Narrow Biological and Artificial Channels.

Authors:  Dmitry G Luchinsky; Peter V E McClintock
Journal:  Entropy (Basel)       Date:  2021-05-21       Impact factor: 2.524

  1 in total

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