Literature DB >> 33474675

On the usage of average Hausdorff distance for segmentation performance assessment: hidden error when used for ranking.

Orhun Utku Aydin1, Abdel Aziz Taha2, Adam Hilbert3, Ahmed A Khalil4,5,6, Ivana Galinovic4, Jochen B Fiebach4, Dietmar Frey3, Vince Istvan Madai3,7.   

Abstract

Average Hausdorff distance is a widely used performance measure to calculate the distance between two point sets. In medical image segmentation, it is used to compare ground truth images with segmentations allowing their ranking. We identified, however, ranking errors of average Hausdorff distance making it less suitable for applications in segmentation performance assessment. To mitigate this error, we present a modified calculation of this performance measure that we have coined "balanced average Hausdorff distance". To simulate segmentations for ranking, we manually created non-overlapping segmentation errors common in magnetic resonance angiography cerebral vessel segmentation as our use-case. Adding the created errors consecutively and randomly to the ground truth, we created sets of simulated segmentations with increasing number of errors. Each set of simulated segmentations was ranked using both performance measures. We calculated the Kendall rank correlation coefficient between the segmentation ranking and the number of errors in each simulated segmentation. The rankings produced by balanced average Hausdorff distance had a significantly higher median correlation (1.00) than those by average Hausdorff distance (0.89). In 200 total rankings, the former misranked 52 whilst the latter misranked 179 segmentations. Balanced average Hausdorff distance is more suitable for rankings and quality assessment of segmentations than average Hausdorff distance.

Entities:  

Keywords:  Average Hausdorff distance; Cerebral angiography; Cerebral arteries; Image processing (computer-assisted)

Mesh:

Year:  2021        PMID: 33474675      PMCID: PMC7817746          DOI: 10.1186/s41747-020-00200-2

Source DB:  PubMed          Journal:  Eur Radiol Exp        ISSN: 2509-9280


  10 in total

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Journal:  IEEE Trans Med Imaging       Date:  2012-01-12       Impact factor: 10.048

2.  User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliability.

Authors:  Paul A Yushkevich; Joseph Piven; Heather Cody Hazlett; Rachel Gimpel Smith; Sean Ho; James C Gee; Guido Gerig
Journal:  Neuroimage       Date:  2006-03-20       Impact factor: 6.556

3.  Deep learning for segmentation of brain tumors: Impact of cross-institutional training and testing.

Authors:  Ehab A AlBadawy; Ashirbani Saha; Maciej A Mazurowski
Journal:  Med Phys       Date:  2018-02-08       Impact factor: 4.071

4.  Manual prostate cancer segmentation in MRI: interreader agreement and volumetric correlation with transperineal template core needle biopsy.

Authors:  Marc R Liechti; Urs J Muehlematter; Aurelia F Schneider; Daniel Eberli; Niels J Rupp; Andreas M Hötker; Olivio F Donati; Anton S Becker
Journal:  Eur Radiol       Date:  2020-04-19       Impact factor: 5.315

5.  Atlas-Based Segmentation of Temporal Bone Anatomy.

Authors:  Kimerly A Powell; Tong Liang; Brad Hittle; Don Stredney; Thomas Kerwin; Gregory J Wiet
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-08-29       Impact factor: 2.924

6.  MR Imaging of the Extracranial Facial Nerve with the CISS Sequence.

Authors:  J P Guenette; N Ben-Shlomo; J Jayender; R T Seethamraju; V Kimbrell; N-A Tran; R Y Huang; C J Kim; J I Kass; C E Corrales; T C Lee
Journal:  AJNR Am J Neuroradiol       Date:  2019-10-17       Impact factor: 3.825

7.  Prospective study on the mismatch concept in acute stroke patients within the first 24 h after symptom onset - 1000Plus study.

Authors:  Benjamin Hotter; Sandra Pittl; Martin Ebinger; Gabriele Oepen; Kati Jegzentis; Kohsuke Kudo; Michal Rozanski; Wolf U Schmidt; Peter Brunecker; Chao Xu; Peter Martus; Matthias Endres; Gerhard J Jungehülsing; Arno Villringer; Jochen B Fiebach
Journal:  BMC Neurol       Date:  2009-12-08       Impact factor: 2.474

8.  A U-Net Deep Learning Framework for High Performance Vessel Segmentation in Patients With Cerebrovascular Disease.

Authors:  Michelle Livne; Jana Rieger; Orhun Utku Aydin; Abdel Aziz Taha; Ela Marie Akay; Tabea Kossen; Jan Sobesky; John D Kelleher; Kristian Hildebrand; Dietmar Frey; Vince I Madai
Journal:  Front Neurosci       Date:  2019-02-28       Impact factor: 4.677

9.  Impact of inter-reader contouring variability on textural radiomics of colorectal liver metastases.

Authors:  Francesco Rizzetto; Francesca Calderoni; Cristina De Mattia; Arianna Defeudis; Valentina Giannini; Simone Mazzetti; Lorenzo Vassallo; Silvia Ghezzi; Andrea Sartore-Bianchi; Silvia Marsoni; Salvatore Siena; Daniele Regge; Alberto Torresin; Angelo Vanzulli
Journal:  Eur Radiol Exp       Date:  2020-11-10

10.  Metrics for evaluating 3D medical image segmentation: analysis, selection, and tool.

Authors:  Abdel Aziz Taha; Allan Hanbury
Journal:  BMC Med Imaging       Date:  2015-08-12       Impact factor: 1.930

  10 in total
  6 in total

1.  Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network.

Authors:  Nicolette Taku; Kareem A Wahid; Lisanne V van Dijk; Jaakko Sahlsten; Joel Jaskari; Kimmo Kaski; Clifton D Fuller; Mohamed A Naser
Journal:  Clin Transl Radiat Oncol       Date:  2022-06-18

Review 2.  Towards a guideline for evaluation metrics in medical image segmentation.

Authors:  Dominik Müller; Iñaki Soto-Rey; Frank Kramer
Journal:  BMC Res Notes       Date:  2022-06-20

3.  Toward Sharing Brain Images: Differentially Private TOF-MRA Images With Segmentation Labels Using Generative Adversarial Networks.

Authors:  Tabea Kossen; Manuel A Hirzel; Vince I Madai; Franziska Boenisch; Anja Hennemuth; Kristian Hildebrand; Sebastian Pokutta; Kartikey Sharma; Adam Hilbert; Jan Sobesky; Ivana Galinovic; Ahmed A Khalil; Jochen B Fiebach; Dietmar Frey
Journal:  Front Artif Intell       Date:  2022-05-02

4.  Survey of Supervised Learning for Medical Image Processing.

Authors:  Abeer Aljuaid; Mohd Anwar
Journal:  SN Comput Sci       Date:  2022-05-17

5.  Development of Novel Residual-Dense-Attention (RDA) U-Net Network Architecture for Hepatocellular Carcinoma Segmentation.

Authors:  Wen-Fan Chen; Hsin-You Ou; Han-Yu Lin; Chia-Po Wei; Chien-Chang Liao; Yu-Fan Cheng; Cheng-Tang Pan
Journal:  Diagnostics (Basel)       Date:  2022-08-08

6.  An evaluation of performance measures for arterial brain vessel segmentation.

Authors:  Orhun Utku Aydin; Abdel Aziz Taha; Adam Hilbert; Ahmed A Khalil; Ivana Galinovic; Jochen B Fiebach; Dietmar Frey; Vince Istvan Madai
Journal:  BMC Med Imaging       Date:  2021-07-16       Impact factor: 1.930

  6 in total

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