Literature DB >> 33474481

Next-generation sequencing yields the complete mitochondrial genome of the endangered Milos viper Macrovipera schweizeri (Reptilia, Viperidae).

Evanthia Thanou1,2, Panagiotis Kornilios1,2,3.   

Abstract

The Milos viper, Macrovipera schweizeri, is an endangered viperid snake found on four Aegean islands (Greece). Its complete mitochondrial genome, the first reported for the genus Macrovipera, was assembled through next-generation sequencing. Its total length is 17,152 bp and includes 22 tRNAs, two ribosomal RNA genes, 13 protein-coding genes and two control regions, showing the typical gene-arrangement for Viperidae. Eight tRNAs and ND3 are encoded on the light strand, while all other genes are encoded on the heavy strand. A mitogenomic phylogeny that included Macrovipera schweizeri and 13 other viperid genera returned an unresolved relationship among the genera Macrovipera, Daboia and Vipera.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Macrovipera schweizeri; Milos viper; Squamata; Viperidae; mitogenome; mtDNA

Year:  2018        PMID: 33474481      PMCID: PMC7800557          DOI: 10.1080/23802359.2018.1532348

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  10 in total

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2.  Molecular phylogeny of Vipera Laurenti, 1768 and the related genera Macrovipera (Reuss, 1927) and Daboia (Gray, 1842), with comments about neurotoxic Vipera aspis aspis populations.

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Journal:  Mol Phylogenet Evol       Date:  2005-01-20       Impact factor: 4.286

3.  Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales.

Authors:  Brant C Faircloth; John E McCormack; Nicholas G Crawford; Michael G Harvey; Robb T Brumfield; Travis C Glenn
Journal:  Syst Biol       Date:  2012-01-09       Impact factor: 15.683

4.  Evolutionary relationships among the true vipers (Reptilia: Viperidae) inferred from mitochondrial DNA sequences.

Authors:  P Lenk; S Kalyabina; M Wink; U Joger
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5.  MITOS: improved de novo metazoan mitochondrial genome annotation.

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6.  Ultrafast approximation for phylogenetic bootstrap.

Authors:  Bui Quang Minh; Minh Anh Thi Nguyen; Arndt von Haeseler
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7.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

8.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

9.  Multiple independent structural dynamic events in the evolution of snake mitochondrial genomes.

Authors:  Lifu Qian; Hui Wang; Jie Yan; Tao Pan; Shanqun Jiang; Dingqi Rao; Baowei Zhang
Journal:  BMC Genomics       Date:  2018-05-10       Impact factor: 3.969

10.  MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

Authors:  Kazutaka Katoh; John Rozewicki; Kazunori D Yamada
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622

  10 in total

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