Literature DB >> 33474312

The complete chloroplast genome sequence of Solanum hougasii, one of the potato wild relative species.

Kwang-Soo Cho1, Ji-Hong Cho1, Ju-Sung Im1, Jang-Gyu Choi1, Young-Eun Park1, Dong-Chil Jang1, Su-Young Hong1, Tae-Ho Park2.   

Abstract

Solanum hougasii is a wild tuber-bearing species belonging to the family Solanaceae. The complete chloroplast genome of S. hougasii was constituted by de novo assembly, using a small amount of whole genome sequencing data. The chloroplast genome of S. hougasii was a circular DNA molecule with a length of 155,549 bp and consisted of 85,990 bp of large single copy, 18,373 bp of small single copy, and 25,593 bp of a pair of inverted repeat regions. A total of 158 genes were annotated, including 105 protein-coding genes, 45 tRNA genes, and eight rRNA genes. Maximum likelihood phylogenetic analysis with 25 Solanaceae species revealed that S. hougasii is most closely grouped with S. tuberosum.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chloroplast; Solanum hougasii; genome; genome sequence

Year:  2018        PMID: 33474312      PMCID: PMC7800044          DOI: 10.1080/23802359.2018.1491342

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  1 in total

1.  Complete chloroplast genome sequence of Solanum hjertingii, one of the wild potato relatives.

Authors:  Tae-Ho Park
Journal:  Mitochondrial DNA B Resour       Date:  2022-04-25       Impact factor: 0.610

  1 in total

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