Literature DB >> 33474096

The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny.

Chaoyang Li1, Yunlin Zhao1, Huimin Huang1, Yi Ding1, Yinhui Hu2, Zhenggang Xu1,2.   

Abstract

Vicia sepium L., as a pan-temperate species, it is suitable as a constituent part of grazed grasslands because it can be resistant to winter kill and it contains abundant proteins. In this study, complete chloroplast genome of V. sepium was explored and phylogenetic analysis was done. The result showed that the whole genome was 124,095 bp long with IR loss. The overall GC content was 35.03%. A total of 109 genes were identified, including 80 protein-coding, 30 transfer RNA, and four ribosome RNA genes. Similar to most of the IRLC plastoms, rpl22, rps16 and one intron of clpP were lost. The phylogenetic analysis of protein-coding genes from 25 Fabaceae species belonging to IRLC showed that V. sepium was similar to V. sativa. The chloroplast genome reported here will promote our understanding of the phylogeny and evolution of the genus Vicia.
© 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chloroplast genome; Vicia sepium; inverted-repeat-lacking; phylogeny

Year:  2018        PMID: 33474096      PMCID: PMC7799580          DOI: 10.1080/23802359.2018.1431071

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  2 in total

1.  Complete Chloroplast Genome of the Inverted Repeat-Lacking Species Vicia bungei and Development of Polymorphic Simple Sequence Repeat Markers.

Authors:  Ick-Hyun Jo; Seahee Han; Donghwan Shim; Hojin Ryu; Tae Kyung Hyun; Yi Lee; Daeil Kim; Yoon-Sup So; Jong-Wook Chung
Journal:  Front Plant Sci       Date:  2022-05-16       Impact factor: 6.627

2.  Identification of Vicia Species Native to South Korea Using Molecular and Morphological Characteristics.

Authors:  Seahee Han; Raveendar Sebastin; XiaoHan Wang; Kyung Jun Lee; Gyu-Taek Cho; Do Yoon Hyun; Jong-Wook Chung
Journal:  Front Plant Sci       Date:  2021-02-09       Impact factor: 5.753

  2 in total

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