Literature DB >> 33473995

The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae).

Yeisoo Yu1, Hyun-Oh Lee1, Joong Hyoun Chin2, Han Yong Park3, Soo-Cheul Yoo4.   

Abstract

Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.
© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  N22; Nagina-22; Oryza sativa; Poaceae; aus-type; chloroplast genome

Year:  2017        PMID: 33473995      PMCID: PMC7800824          DOI: 10.1080/23802359.2017.1407710

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  2 in total

1.  Identification of Markers for Root Traits Related to Drought Tolerance Using Traditional Rice Germplasm.

Authors:  Harendra Verma; R N Sarma
Journal:  Mol Biotechnol       Date:  2021-08-16       Impact factor: 2.695

2.  Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny.

Authors:  Jing Fan; Wen-You Zhu; Zhong-Fang Li; Xin-Fen Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2020-10-27       Impact factor: 0.658

  2 in total

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