Literature DB >> 33473498

The complete mitochondrial genome of the Alticorpus geoffreyi.

Da-Shi Qi1, Jin-Hao Tao2, Xiao-Jing Huang1, Jie Jiang1, Mei Wang1, Lian-Qin Zhang1, Xin-Yu Mei3.   

Abstract

The present study reported the complete mitochondrial genome of Alticorpus geoffreyi for the first time. The mitochondrial genome of A. geoffreyi possesses 16,578 bp in length, involving 22 transfer RNA genes, 2 ribosomal RNA, 13 protein-coding genes and one control region. In addition, its GC content is 45.82% that is similar to that of Astatotilapia calliptera (the GC content of 45.90%). Based on the complete mitochondrial genomes of 14 closely related species, the phylogenetic tree was further made to show their phylogenic relationship. The results will serve as a useful dataset for studying the evolution of Cichlidae mitochondrial genome.
© 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Alticorpus geoffreyi; mitogenome; phylogenic relationship

Year:  2016        PMID: 33473498      PMCID: PMC7800650          DOI: 10.1080/23802359.2016.1176876

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  5 in total

1.  AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method.

Authors:  Alexandros P Stamatakis; Thomas Ludwig; Harald Meier; Marty J Wolf
Journal:  Proc IEEE Comput Soc Bioinform Conf       Date:  2002

2.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

3.  Mitochondrial genome of Hylaeus dilatatus (Hymenoptera: Colletidae).

Authors:  Meihua Tan; Rui Zhang; Chloe Hardman; Xin Zhou
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-01-28       Impact factor: 1.514

4.  Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

Authors:  Andrew J Alverson; XiaoXin Wei; Danny W Rice; David B Stern; Kerrie Barry; Jeffrey D Palmer
Journal:  Mol Biol Evol       Date:  2010-01-29       Impact factor: 16.240

5.  The complete mitochondrial genome of the Fossorochromis rostratus.

Authors:  Da-Shi Qi; Shi-Chun Zhang; Jie Jiang; Lian-Qin Zhang; Yan-Yan Fu; Zong-Ming Du; Mei Wang; Xiao-Jing Huang; Yu-Lan Wang; Yuan-Jian Song; Quan-Rong Zheng; Ye Xiong
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-09-15       Impact factor: 1.514

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.