Literature DB >> 33473140

Molecular determinants and mechanism for antibody cocktail preventing SARS-CoV-2 escape.

Zhiqiang Ku1, Xuping Xie2, Edgar Davidson3, Xiaohua Ye1, Hang Su1, Vineet D Menachery4, Yize Li5, Zihao Yuan1, Xianwen Zhang2, Antonio E Muruato2, Ariadna Grinyo I Escuer3, Breanna Tyrell3, Kyle Doolan3, Benjamin J Doranz3, Daniel Wrapp6, Paul F Bates5, Jason S McLellan6, Susan R Weiss5, Ningyan Zhang7, Pei-Yong Shi8, Zhiqiang An9.   

Abstract

Antibody cocktails represent a promising approach to prevent SARS-CoV-2 escape. The determinants for selecting antibody combinations and the mechanism that antibody cocktails prevent viral escape remain unclear. We compared the critical residues in the receptor-binding domain (RBD) used by multiple neutralizing antibodies and cocktails and identified a combination of two antibodies CoV2-06 and CoV2-14 for preventing viral escape. The two antibodies simultaneously bind to non-overlapping epitopes and independently compete for receptor binding. SARS-CoV-2 rapidly escapes from individual antibodies by generating resistant mutations in vitro, but it doesn't escape from the cocktail due to stronger mutational constraints on RBD-ACE2 interaction and RBD protein folding requirements. We also identified a conserved neutralizing epitope shared between SARS-CoV-2 and SARS-CoV for antibody CoV2-12. Treatments with CoV2-06 and CoV2-14 individually and in combination confer protection in mice. These findings provide insights for rational selection and mechanistic understanding of antibody cocktails as candidates for treating COVID-19.

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Year:  2021        PMID: 33473140      PMCID: PMC7817669          DOI: 10.1038/s41467-020-20789-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  40 in total

1.  Human neutralizing antibodies elicited by SARS-CoV-2 infection.

Authors:  Bin Ju; Qi Zhang; Jiwan Ge; Ruoke Wang; Jing Sun; Xiangyang Ge; Jiazhen Yu; Sisi Shan; Bing Zhou; Shuo Song; Xian Tang; Jinfang Yu; Jun Lan; Jing Yuan; Haiyan Wang; Juanjuan Zhao; Shuye Zhang; Youchun Wang; Xuanling Shi; Lei Liu; Jincun Zhao; Xinquan Wang; Zheng Zhang; Linqi Zhang
Journal:  Nature       Date:  2020-05-26       Impact factor: 49.962

2.  OrfPredictor: predicting protein-coding regions in EST-derived sequences.

Authors:  Xiang Jia Min; Gregory Butler; Reginald Storms; Adrian Tsang
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

3.  Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding.

Authors:  Tyler N Starr; Allison J Greaney; Sarah K Hilton; Daniel Ellis; Katharine H D Crawford; Adam S Dingens; Mary Jane Navarro; John E Bowen; M Alejandra Tortorici; Alexandra C Walls; Neil P King; David Veesler; Jesse D Bloom
Journal:  Cell       Date:  2020-08-11       Impact factor: 41.582

4.  Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model.

Authors:  Thomas F Rogers; Fangzhu Zhao; Deli Huang; Nathan Beutler; Alison Burns; Wan-Ting He; Oliver Limbo; Chloe Smith; Ge Song; Jordan Woehl; Linlin Yang; Robert K Abbott; Sean Callaghan; Elijah Garcia; Jonathan Hurtado; Mara Parren; Linghang Peng; Sydney Ramirez; James Ricketts; Michael J Ricciardi; Stephen A Rawlings; Nicholas C Wu; Meng Yuan; Davey M Smith; David Nemazee; John R Teijaro; James E Voss; Ian A Wilson; Raiees Andrabi; Bryan Briney; Elise Landais; Devin Sok; Joseph G Jardine; Dennis R Burton
Journal:  Science       Date:  2020-06-15       Impact factor: 47.728

5.  An Infectious cDNA Clone of SARS-CoV-2.

Authors:  Xuping Xie; Antonio Muruato; Kumari G Lokugamage; Krishna Narayanan; Xianwen Zhang; Jing Zou; Jianying Liu; Craig Schindewolf; Nathen E Bopp; Patricia V Aguilar; Kenneth S Plante; Scott C Weaver; Shinji Makino; James W LeDuc; Vineet D Menachery; Pei-Yong Shi
Journal:  Cell Host Microbe       Date:  2020-04-13       Impact factor: 21.023

6.  A highly conserved cryptic epitope in the receptor binding domains of SARS-CoV-2 and SARS-CoV.

Authors:  Meng Yuan; Nicholas C Wu; Xueyong Zhu; Chang-Chun D Lee; Ray T Y So; Huibin Lv; Chris K P Mok; Ian A Wilson
Journal:  Science       Date:  2020-04-03       Impact factor: 47.728

7.  Studies in humanized mice and convalescent humans yield a SARS-CoV-2 antibody cocktail.

Authors:  Johanna Hansen; Alina Baum; Kristen E Pascal; Vincenzo Russo; Stephanie Giordano; Elzbieta Wloga; Benjamin O Fulton; Ying Yan; Katrina Koon; Krunal Patel; Kyung Min Chung; Aynur Hermann; Erica Ullman; Jonathan Cruz; Ashique Rafique; Tammy Huang; Jeanette Fairhurst; Christen Libertiny; Marine Malbec; Wen-Yi Lee; Richard Welsh; Glen Farr; Seth Pennington; Dipali Deshpande; Jemmie Cheng; Anke Watty; Pascal Bouffard; Robert Babb; Natasha Levenkova; Calvin Chen; Bojie Zhang; Annabel Romero Hernandez; Kei Saotome; Yi Zhou; Matthew Franklin; Sumathi Sivapalasingam; David Chien Lye; Stuart Weston; James Logue; Robert Haupt; Matthew Frieman; Gang Chen; William Olson; Andrew J Murphy; Neil Stahl; George D Yancopoulos; Christos A Kyratsous
Journal:  Science       Date:  2020-06-15       Impact factor: 47.728

8.  The receptor binding domain of the viral spike protein is an immunodominant and highly specific target of antibodies in SARS-CoV-2 patients.

Authors:  Lakshmanane Premkumar; Bruno Segovia-Chumbez; Ramesh Jadi; David R Martinez; Rajendra Raut; Alena Markmann; Caleb Cornaby; Luther Bartelt; Susan Weiss; Yara Park; Caitlin E Edwards; Eric Weimer; Erin M Scherer; Nadine Rouphael; Srilatha Edupuganti; Daniela Weiskopf; Longping V Tse; Yixuan J Hou; David Margolis; Alessandro Sette; Matthew H Collins; John Schmitz; Ralph S Baric; Aravinda M de Silva
Journal:  Sci Immunol       Date:  2020-06-11

9.  Potently neutralizing and protective human antibodies against SARS-CoV-2.

Authors:  Seth J Zost; Pavlo Gilchuk; James Brett Case; Elad Binshtein; Rita E Chen; Joseph P Nkolola; Alexandra Schäfer; Joseph X Reidy; Andrew Trivette; Rachel S Nargi; Rachel E Sutton; Naveenchandra Suryadevara; David R Martinez; Lauren E Williamson; Elaine C Chen; Taylor Jones; Samuel Day; Luke Myers; Ahmed O Hassan; Natasha M Kafai; Emma S Winkler; Julie M Fox; Swathi Shrihari; Benjamin K Mueller; Jens Meiler; Abishek Chandrashekar; Noe B Mercado; James J Steinhardt; Kuishu Ren; Yueh-Ming Loo; Nicole L Kallewaard; Broc T McCune; Shamus P Keeler; Michael J Holtzman; Dan H Barouch; Lisa E Gralinski; Ralph S Baric; Larissa B Thackray; Michael S Diamond; Robert H Carnahan; James E Crowe
Journal:  Nature       Date:  2020-07-15       Impact factor: 69.504

10.  A mouse-adapted model of SARS-CoV-2 to test COVID-19 countermeasures.

Authors:  Kenneth H Dinnon; Sarah R Leist; Alexandra Schäfer; Caitlin E Edwards; David R Martinez; Stephanie A Montgomery; Ande West; Boyd L Yount; Yixuan J Hou; Lily E Adams; Kendra L Gully; Ariane J Brown; Emily Huang; Matthew D Bryant; Ingrid C Choong; Jeffrey S Glenn; Lisa E Gralinski; Timothy P Sheahan; Ralph S Baric
Journal:  Nature       Date:  2020-08-27       Impact factor: 49.962

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  51 in total

1.  Antibody-laden nasal spray could provide COVID protection - and treatment.

Authors:  Diana Kwon
Journal:  Nature       Date:  2021-06-04       Impact factor: 49.962

Review 2.  Monoclonal antibodies for COVID-19 therapy and SARS-CoV-2 detection.

Authors:  Yu-Chyi Hwang; Ruei-Min Lu; Shih-Chieh Su; Pao-Yin Chiang; Shih-Han Ko; Feng-Yi Ke; Kang-Hao Liang; Tzung-Yang Hsieh; Han-Chung Wu
Journal:  J Biomed Sci       Date:  2022-01-04       Impact factor: 8.410

3.  Nasal delivery of an IgM offers broad protection from SARS-CoV-2 variants.

Authors:  Zhiqiang Ku; Xuping Xie; Paul R Hinton; Xinli Liu; Xiaohua Ye; Antonio E Muruato; Dean C Ng; Sujit Biswas; Jing Zou; Yang Liu; Deepal Pandya; Vineet D Menachery; Sachi Rahman; Yu-An Cao; Hui Deng; Wei Xiong; Kevin B Carlin; Junquan Liu; Hang Su; Elizabeth J Haanes; Bruce A Keyt; Ningyan Zhang; Stephen F Carroll; Pei-Yong Shi; Zhiqiang An
Journal:  Nature       Date:  2021-06-03       Impact factor: 49.962

4.  Models to inform neutralizing antibody therapy strategies during pandemics: the case of SARS-CoV-2.

Authors:  Donovan Guttieres; Anthony J Sinskey; Stacy L Springs
Journal:  Antib Ther       Date:  2021-03-20

Review 5.  SARS-CoV-2: Pathogenesis, Molecular Targets and Experimental Models.

Authors:  G Kanimozhi; B Pradhapsingh; Charan Singh Pawar; Haseeb A Khan; Salman H Alrokayan; N Rajendra Prasad
Journal:  Front Pharmacol       Date:  2021-04-22       Impact factor: 5.810

6.  A single dose of the SARS-CoV-2 vaccine BNT162b2 elicits Fc-mediated antibody effector functions and T cell responses.

Authors:  Alexandra Tauzin; Manon Nayrac; Mehdi Benlarbi; Shang Yu Gong; Romain Gasser; Guillaume Beaudoin-Bussières; Nathalie Brassard; Annemarie Laumaea; Dani Vézina; Jérémie Prévost; Sai Priya Anand; Catherine Bourassa; Gabrielle Gendron-Lepage; Halima Medjahed; Guillaume Goyette; Julia Niessl; Olivier Tastet; Laurie Gokool; Chantal Morrisseau; Pascale Arlotto; Leonidas Stamatatos; Andrew T McGuire; Catherine Larochelle; Pradeep Uchil; Maolin Lu; Walther Mothes; Gaston De Serres; Sandrine Moreira; Michel Roger; Jonathan Richard; Valérie Martel-Laferrière; Ralf Duerr; Cécile Tremblay; Daniel E Kaufmann; Andrés Finzi
Journal:  Cell Host Microbe       Date:  2021-06-04       Impact factor: 21.023

Review 7.  Developing Recombinant Antibodies by Phage Display Against Infectious Diseases and Toxins for Diagnostics and Therapy.

Authors:  Kristian Daniel Ralph Roth; Esther Veronika Wenzel; Maximilian Ruschig; Stephan Steinke; Nora Langreder; Philip Alexander Heine; Kai-Thomas Schneider; Rico Ballmann; Viola Fühner; Philipp Kuhn; Thomas Schirrmann; André Frenzel; Stefan Dübel; Maren Schubert; Gustavo Marçal Schmidt Garcia Moreira; Federico Bertoglio; Giulio Russo; Michael Hust
Journal:  Front Cell Infect Microbiol       Date:  2021-07-07       Impact factor: 5.293

8.  Prediction and Evolution of the Molecular Fitness of SARS-CoV-2 Variants: Introducing SpikePro.

Authors:  Fabrizio Pucci; Marianne Rooman
Journal:  Viruses       Date:  2021-05-18       Impact factor: 5.048

Review 9.  The Spike of Concern-The Novel Variants of SARS-CoV-2.

Authors:  Anna Winger; Thomas Caspari
Journal:  Viruses       Date:  2021-05-27       Impact factor: 5.048

10.  FnCas9-based CRISPR diagnostic for rapid and accurate detection of major SARS-CoV-2 variants on a paper strip.

Authors:  Manoj Kumar; Sneha Gulati; Asgar H Ansari; Rhythm Phutela; Sundaram Acharya; Mohd Azhar; Jayaram Murthy; Poorti Kathpalia; Akshay Kanakan; Ranjeet Maurya; Janani Srinivasa Vasudevan; Aparna S; Rajesh Pandey; Souvik Maiti; Debojyoti Chakraborty
Journal:  Elife       Date:  2021-06-09       Impact factor: 8.140

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