Literature DB >> 33468052

Comparative whole-genome and proteomics analyses of the next seed bank and the original master seed bank of MucoRice-CTB 51A line, a rice-based oral cholera vaccine.

Ai Sasou1, Yoshikazu Yuki2, Ayaka Honma1, Kotomi Sugiura1, Koji Kashima3, Hiroko Kozuka-Hata4, Masanori Nojima5, Masaaki Oyama4, Shiho Kurokawa1, Shinichi Maruyama3, Masaharu Kuroda6, Shinjiro Tanoue7, Narushi Takamatsu7, Kohtaro Fujihashi8, Eiji Goto9, Hiroshi Kiyono1,8,10,11.   

Abstract

BACKGROUND: We have previously developed a rice-based oral vaccine against cholera diarrhea, MucoRice-CTB. Using Agrobacterium-mediated co-transformation, we produced the selection marker-free MucoRice-CTB line 51A, which has three copies of the cholera toxin B subunit (CTB) gene and two copies of an RNAi cassette inserted into the rice genome. We determined the sequence and location of the transgenes on rice chromosomes 3 and 12. The expression of alpha-amylase/trypsin inhibitor, a major allergen protein in rice, is lower in this line than in wild-type rice. Line 51A was self-pollinated for five generations to fix the transgenes, and the seeds of the sixth generation produced by T5 plants were defined as the master seed bank (MSB). T6 plants were grown from part of the MSB seeds and were self-pollinated to produce T7 seeds (next seed bank; NSB). NSB was examined and its whole genome and proteome were compared with those of MSB.
RESULTS: We re-sequenced the transgenes of NSB and MSB and confirmed the positions of the three CTB genes inserted into chromosomes 3 and 12. The DNA sequences of the transgenes were identical between NSB and MSB. Using whole-genome sequencing, we compared the genome sequences of three NSB with three MSB samples, and evaluated the effects of SNPs and genomic structural variants by clustering. No functionally important mutations (SNPs, translocations, deletions, or inversions of genic regions on chromosomes) between NSB and MSB samples were detected. Analysis of salt-soluble proteins from NSB and MSB samples by shot-gun MS/MS detected no considerable differences in protein abundance. No difference in the expression pattern of storage proteins and CTB in mature seeds of NSB and MSB was detected by immuno-fluorescence microscopy.
CONCLUSIONS: All analyses revealed no considerable differences between NSB and MSB samples. Therefore, NSB can be used to replace MSB in the near future.

Entities:  

Keywords:  MucoRice-CTB; Oral cholera vaccine; Plant-made pharmaceuticals; Proteomics analysis; Seed bank; Shot-gun MS/MS; Transgenic rice; Whole-genome re-sequencing

Mesh:

Substances:

Year:  2021        PMID: 33468052      PMCID: PMC7814724          DOI: 10.1186/s12864-020-07355-7

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   3.969


  29 in total

1.  Open source clustering software.

Authors:  M J L de Hoon; S Imoto; J Nolan; S Miyano
Journal:  Bioinformatics       Date:  2004-02-10       Impact factor: 6.937

2.  Ultrastructure of mature protein body in the starchy endosperm of dry cereal grain.

Authors:  Yuhi Saito; Takanari Shigemitsu; Kunisuke Tanaka; Shigeto Morita; Shigeru Satoh; Takehiro Masumura
Journal:  Biosci Biotechnol Biochem       Date:  2010-07-07       Impact factor: 2.043

3.  Plant-based oral delivery of β-glucocerebrosidase as an enzyme replacement therapy for Gaucher's disease.

Authors:  Yoseph Shaaltiel; Svetlana Gingis-Velitski; Salit Tzaban; Nadia Fiks; Yoram Tekoah; David Aviezer
Journal:  Plant Biotechnol J       Date:  2015-04-01       Impact factor: 9.803

4.  Regulatory approval and a first-in-human phase I clinical trial of a monoclonal antibody produced in transgenic tobacco plants.

Authors:  Julian K-C Ma; Jürgen Drossard; David Lewis; Friedrich Altmann; Julia Boyle; Paul Christou; Tom Cole; Philip Dale; Craig J van Dolleweerd; Valerie Isitt; Dietmar Katinger; Martin Lobedan; Hubert Mertens; Mathew J Paul; Thomas Rademacher; Markus Sack; Penelope A C Hundleby; Gabriela Stiegler; Eva Stoger; Richard M Twyman; Brigitta Vcelar; Rainer Fischer
Journal:  Plant Biotechnol J       Date:  2015-07-03       Impact factor: 9.803

5.  Oral rice-based vaccine induces passive and active immunity against enterotoxigenic E. coli-mediated diarrhea in pigs.

Authors:  Natsumi Takeyama; Yoshikazu Yuki; Daisuke Tokuhara; Kazuki Oroku; Mio Mejima; Shiho Kurokawa; Masaharu Kuroda; Toshiaki Kodama; Shinya Nagai; Susumu Ueda; Hiroshi Kiyono
Journal:  Vaccine       Date:  2015-08-04       Impact factor: 3.641

6.  Production of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system.

Authors:  Yoseph Shaaltiel; Daniel Bartfeld; Sharon Hashmueli; Gideon Baum; Einat Brill-Almon; Gad Galili; Orly Dym; Swetlana A Boldin-Adamsky; Israel Silman; Joel L Sussman; Anthony H Futerman; David Aviezer
Journal:  Plant Biotechnol J       Date:  2007-05-24       Impact factor: 9.803

7.  Good manufacturing practices production of a purification-free oral cholera vaccine expressed in transgenic rice plants.

Authors:  Koji Kashima; Yoshikazu Yuki; Mio Mejima; Shiho Kurokawa; Yuji Suzuki; Satomi Minakawa; Natsumi Takeyama; Yoshiko Fukuyama; Tatsuhiko Azegami; Takeshi Tanimoto; Masaharu Kuroda; Minoru Tamura; Yasuyuki Gomi; Hiroshi Kiyono
Journal:  Plant Cell Rep       Date:  2015-12-11       Impact factor: 4.570

8.  Comparative whole-genome analyses of selection marker-free rice-based cholera toxin B-subunit vaccine lines and wild-type lines.

Authors:  Koji Kashima; Mio Mejima; Shiho Kurokawa; Masaharu Kuroda; Hiroshi Kiyono; Yoshikazu Yuki
Journal:  BMC Genomics       Date:  2015-02-05       Impact factor: 3.969

9.  Accumulation of foreign polypeptides to rice seed protein body type I using prolamin portion sequences.

Authors:  Ai Sasou; Takanari Shigemitsu; Shigeto Morita; Takehiro Masumura
Journal:  Plant Cell Rep       Date:  2016-12-27       Impact factor: 4.570

10.  Reversion of advanced Ebola virus disease in nonhuman primates with ZMapp.

Authors:  Xiangguo Qiu; Gary Wong; Jonathan Audet; Alexander Bello; Lisa Fernando; Judie B Alimonti; Hugues Fausther-Bovendo; Haiyan Wei; Jenna Aviles; Ernie Hiatt; Ashley Johnson; Josh Morton; Kelsi Swope; Ognian Bohorov; Natasha Bohorova; Charles Goodman; Do Kim; Michael H Pauly; Jesus Velasco; James Pettitt; Gene G Olinger; Kevin Whaley; Bianli Xu; James E Strong; Larry Zeitlin; Gary P Kobinger
Journal:  Nature       Date:  2014-08-29       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.