Literature DB >> 33466477

Interrogating Plant-Microbe Interactions with Chemical Tools: Click Chemistry Reagents for Metabolic Labeling and Activity-Based Probes.

Vivian S Lin1.   

Abstract

Continued expansion of the chemical biology toolbox presents many new and diverse opportunities to interrogate the fundamental molecular mechanisms driving complex plant-microbe interactions. This review will examine metabolic labeling with click chemistry reagents and activity-based probes for investigating the impacts of plant-associated microbes on plant growth, metabolism, and immune responses. While the majority of the studies reviewed here used chemical biology approaches to examine the effects of pathogens on plants, chemical biology will also be invaluable in future efforts to investigate mutualistic associations between beneficial microbes and their plant hosts.

Entities:  

Keywords:  activity-based probes; biosensors; chemical biology; click chemistry; metabolic labeling; plant–microbe interactions

Mesh:

Year:  2021        PMID: 33466477      PMCID: PMC7796436          DOI: 10.3390/molecules26010243

Source DB:  PubMed          Journal:  Molecules        ISSN: 1420-3049            Impact factor:   4.411


  63 in total

Review 1.  Activity-Based Protein Profiling-Enabling Multimodal Functional Studies of Microbial Communities.

Authors:  Christopher Whidbey; Aaron T Wright
Journal:  Curr Top Microbiol Immunol       Date:  2019       Impact factor: 4.291

Review 2.  Activity-based protein profiling: from enzyme chemistry to proteomic chemistry.

Authors:  Benjamin F Cravatt; Aaron T Wright; John W Kozarich
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 3.  Metabolic niches in the rhizosphere microbiome: new tools and approaches to analyse metabolic mechanisms of plant-microbe nutrient exchange.

Authors:  Richard P Jacoby; Stanislav Kopriva
Journal:  J Exp Bot       Date:  2019-02-20       Impact factor: 6.992

Review 4.  Chemical strategies to unravel bacterial-eukaryotic signaling.

Authors:  R Gregor; S David; M M Meijler
Journal:  Chem Soc Rev       Date:  2018-03-05       Impact factor: 54.564

5.  Protease Activities Triggered by Ralstonia solanacearum Infection in Susceptible and Tolerant Tomato Lines.

Authors:  Marc Planas-Marquès; Martí Bernardo-Faura; Judith Paulus; Farnusch Kaschani; Markus Kaiser; Marc Valls; Renier A L van der Hoorn; Núria S Coll
Journal:  Mol Cell Proteomics       Date:  2018-03-09       Impact factor: 5.911

6.  A versatile click-compatible monolignol probe to study lignin deposition in plant cell walls.

Authors:  Jyotsna L Pandey; Bo Wang; Brett G Diehl; Tom L Richard; Gong Chen; Charles T Anderson
Journal:  PLoS One       Date:  2015-04-17       Impact factor: 3.240

7.  Click chemistry-based tracking reveals putative cell wall-located auxin binding sites in expanding cells.

Authors:  Jozef Mravec; Stjepan K Kračun; Elena Zemlyanskaya; Maja G Rydahl; Xiaoyuan Guo; Martina Pičmanová; Kasper K Sørensen; Kamil Růžička; William G T Willats
Journal:  Sci Rep       Date:  2017-11-22       Impact factor: 4.379

Review 8.  Bacterial Endophyte Colonization and Distribution within Plants.

Authors: 
Journal:  Microorganisms       Date:  2017-11-25

9.  Plant genome and transcriptome annotations: from misconceptions to simple solutions.

Authors:  Marie E Bolger; Borjana Arsova; Björn Usadel
Journal:  Brief Bioinform       Date:  2018-05-01       Impact factor: 11.622

10.  Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis.

Authors:  Katherine F Steward; Brian Eilers; Brian Tripet; Amanda Fuchs; Michael Dorle; Rachel Rawle; Berliza Soriano; Narayanaganesh Balasubramanian; Valérie Copié; Brian Bothner; Roland Hatzenpichler
Journal:  Front Microbiol       Date:  2020-02-13       Impact factor: 5.640

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  1 in total

1.  Metabolomics Insights into Chemical Convergence in Xanthomonas perforans and Metabolic Changes Following Treatment with the Small Molecule Carvacrol.

Authors:  Mustafa Ojonuba Jibrin; Qingchun Liu; Joy Guingab-Cagmat; Jeffrey B Jones; Timothy J Garrett; Shouan Zhang
Journal:  Metabolites       Date:  2021-12-16
  1 in total

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