Literature DB >> 33466245

New Insights into Plant Extracellular DNA. A Study in Soybean Root Extracellular Trap.

Marie Chambard1,2, Carole Plasson1,2, Céline Derambure3, Sophie Coutant3, Isabelle Tournier3, Benjamin Lefranc4, Jérôme Leprince4, Marie-Christine Kiefer-Meyer1,2, Azeddine Driouich1,2, Marie-Laure Follet-Gueye1,2, Isabelle Boulogne1,2.   

Abstract

exDNA is found in various organisms, including plants. However, plant exDNA has thus far received little attention related to its origin and role in the RET (root extracellular trap). In this study, we performed the first high-throughput genomic sequencing of plant exDNA from a Fabaceae with worldwide interest: soybean (Glycine max (L.) Merr.). The origin of this exDNA was first investigated in control condition, and the results show high-coverage on organelles (mitochondria/plastid) DNA relative to nuclear DNA, as well as a mix of coding and non-coding sequences. In the second part of this study, we investigated if exDNA release was modified during an elicitation with PEP-13 (a peptide elicitor from oomycete genus Phytophthora). Our results show that treatment of roots with PEP-13 does not affect the composition of exDNA.

Entities:  

Keywords:  Glycine max (L.) Merr; PEP-13; high-throughput DNA sequencing; plant exDNA; root extracellular trap (RET)

Year:  2021        PMID: 33466245      PMCID: PMC7824799          DOI: 10.3390/cells10010069

Source DB:  PubMed          Journal:  Cells        ISSN: 2073-4409            Impact factor:   6.600


  58 in total

1.  Comparative analysis of HD2 type histone deacetylases in higher plants.

Authors:  M Dangl; G Brosch; H Haas; P Loidl; A Lusser
Journal:  Planta       Date:  2001-06       Impact factor: 4.116

2.  Fish cast NETs: neutrophil extracellular traps are released from fish neutrophils.

Authors:  Dusan Palić; Jelena Ostojić; Claire B Andreasen; James A Roth
Journal:  Dev Comp Immunol       Date:  2006-12-29       Impact factor: 3.636

3.  The PLASTID DIVISION1 and 2 components of the chloroplast division machinery determine the rate of chloroplast division in land plant cell differentiation.

Authors:  Kumiko Okazaki; Yukihiro Kabeya; Kenji Suzuki; Toshiyuki Mori; Takanari Ichikawa; Minami Matsui; Hiromitsu Nakanishi; Shin-Ya Miyagishima
Journal:  Plant Cell       Date:  2009-06-30       Impact factor: 11.277

Review 4.  Root extracellular traps versus neutrophil extracellular traps in host defence, a case of functional convergence?

Authors:  Azeddine Driouich; Carine Smith; Marc Ropitaux; Marie Chambard; Isabelle Boulogne; Sophie Bernard; Marie-Laure Follet-Gueye; Maïté Vicré; John Moore
Journal:  Biol Rev Camb Philos Soc       Date:  2019-05-27

Review 5.  Pattern recognition receptors and signaling in plant-microbe interactions.

Authors:  Yusuke Saijo; Eliza Po-Iian Loo; Shigetaka Yasuda
Journal:  Plant J       Date:  2018-02-02       Impact factor: 6.417

6.  Extracellular self-DNA as a damage-associated molecular pattern (DAMP) that triggers self-specific immunity induction in plants.

Authors:  Dalia Duran-Flores; Martin Heil
Journal:  Brain Behav Immun       Date:  2017-10-16       Impact factor: 7.217

Review 7.  Neutrophil Extracellular Traps and Its Implications in Inflammation: An Overview.

Authors:  Vidal Delgado-Rizo; Marco A Martínez-Guzmán; Liliana Iñiguez-Gutierrez; Alejandra García-Orozco; Anabell Alvarado-Navarro; Mary Fafutis-Morris
Journal:  Front Immunol       Date:  2017-02-06       Impact factor: 7.561

8.  SvABA: genome-wide detection of structural variants and indels by local assembly.

Authors:  Jeremiah A Wala; Pratiti Bandopadhayay; Noah F Greenwald; Ryan O'Rourke; Ted Sharpe; Chip Stewart; Steve Schumacher; Yilong Li; Joachim Weischenfeldt; Xiaotong Yao; Chad Nusbaum; Peter Campbell; Gad Getz; Matthew Meyerson; Cheng-Zhong Zhang; Marcin Imielinski; Rameen Beroukhim
Journal:  Genome Res       Date:  2018-03-13       Impact factor: 9.438

9.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

10.  Root Border Cells and Mucilage Secretions of Soybean, Glycine Max (Merr) L.: Characterization and Role in Interactions with the Oomycete Phytophthora Parasitica.

Authors:  Marc Ropitaux; Sophie Bernard; Damien Schapman; Marie-Laure Follet-Gueye; Maïté Vicré; Isabelle Boulogne; Azeddine Driouich
Journal:  Cells       Date:  2020-09-30       Impact factor: 6.600

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  1 in total

1.  Elicitation of Roots and AC-DC with PEP-13 Peptide Shows Differential Defense Responses in Multi-Omics.

Authors:  Marie Chambard; Mohamed Amine Ben Mlouka; Lun Jing; Carole Plasson; Pascal Cosette; Jérôme Leprince; Marie-Laure Follet-Gueye; Azeddine Driouich; Eric Nguema-Ona; Isabelle Boulogne
Journal:  Cells       Date:  2022-08-21       Impact factor: 7.666

  1 in total

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