Qi Liang Lu1, Qi Quan Luo2. 1. School of Physics and Material Science, Anhui University, Hefei 230601, China. 2. Hefei National Laboratory for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei 230026, Anhui, P. R. China.
Abstract
A global search for the lowest energy structure of Co atom-doped boron clusters (CoB19 +, CoB19, and CoB19 - clusters) was conducted. The lowest energy structures of them are remarkably different from those of B20 and CoB18 - clusters. CoB19 + clusters have a bowl-shaped geometry, where the Co atom is at the bottom of the bowl and is coordinated with eight B atoms. The CoB19 cluster presents seven- and eight-membered B rings. The CoB19 - cluster can be viewed as a structure that evolves from a Co-doped boron plane. The coordination number of CoB19 and CoB19 - clusters are 16 and 14, respectively. Several low-lying isomers have quasi-planar structures for the CoB19 - cluster. Some properties including charge transformation and distribution, HOMO-LUMO gaps, molecular orbital distribution, and stability of neutral CoB19 are discussed. CoB19 + and CoB19 - exhibit magnetism with a net moment of 1.0 and 0.94 μB because of odd number of electrons.
A global search for the lowest energy structure of Co atom-doped boron clusters (CoB19 +, CoB19, and CoB19 - clusters) was conducted. The lowest energy structures of them are remarkably different from those of B20 and CoB18 - clusters. CoB19 + clusters have a bowl-shaped geometry, where the Co atom is at the bottom of the bowl and is coordinated with eight B atoms. The CoB19 cluster presents seven- and eight-membered B rings. The CoB19 - cluster can be viewed as a structure that evolves from a Co-doped boron plane. The coordination number of CoB19 and CoB19 - clusters are 16 and 14, respectively. Several low-lying isomers have quasi-planar structures for the CoB19 - cluster. Some properties including charge transformation and distribution, HOMO-LUMO gaps, molecular orbital distribution, and stability of neutral CoB19 are discussed. CoB19 + and CoB19 - exhibit magnetism with a net moment of 1.0 and 0.94 μB because of odd number of electrons.
Boron clusters (B) have been extensively
studied experimentally and theoretically over the past decades because
of their unique characteristics. Elemental B has three valence electrons
and four valence orbitals. Electron deficiency results in multicentered
bonds and various structures. B clusters
can form several different structural forms with planar or quasi-planar,
bowl-shaped, tubular (double and multiple rings), and cage-like configurations.[1−16] Wang et al.[11,17−29] found that planar or quasi-planar structures are preferred for anionic
B clusters within a large size range
of up to n = 38. A bowl-shaped quasi-planar structure
has been obtained for the large cluster B84.[30] Theoretical investigations have shown that planar
to tubular geometrical transitions occur at B20 clusters
in the neutral state.[31]Doping with
other atoms can considerably alter the structural,
electronic, and bond characteristics of B clusters.[32] The B atom has a strong tendency
to form bonds with transition metal (TM) atoms owing to its electron
deficiency. TM-doped B clusters have
received intense attention. TM-doped B clusters can be coordinated at the centers of planar species, such
as CoB6,[33] CoB8–, RuB9–, NbB10–, and TaB10–.[34−37] Drum-like species have been found in TaB16–,[37] CoB16–,[38] MnB16–,[39] and TaB20–[40] clusters, among which the TaB20– cluster sets the coordination number (CN) to
20. A detailed study of TM-doped clusters, including those of Co,
was conducted and reported the presence of drum-shaped boron clusters
and the formation of nanotubes.[41] Theoretical
studies revealed that an endohedral metalloborospherence TaB22– cluster has a high CN of 22.[42] Li et al.[43] reported that the
TaB283+ cluster possesses the highest CN of
28 in chemistry. Two previous studies found that the structures of
CoB18– and RhB18– clusters have planar forms.[44,45] The structures for
large Co-doped boron clusters remain unknown. Based on these studies
on TM-doped 2D and 3D B clusters, we
systematically investigated the structures and properties of Co-doped
B19 clusters.
Results and Discussion
The ground
states of CoB19+, CoB19, and CoB19– at the CCSD(T) level are
presented in Figure . The structures of CoB19+, CoB19, and CoB19– clusters are remarkably
different from those of B20 and CoB18– clusters.[12,31,44,46,47] Charge has
a strong influence on their structures. The CoB19+ cluster has a bowl-shaped geometry, where the Co atom is located
at the bottom of the bowl and coordinated with eight B atoms. The
CoB19 cluster presents seven- and eight-membered B rings,
with four B atoms inserted in the waist of the tube. The ground state
of the CoB19– cluster can be viewed as
a structure that evolved from Co-doped boron plane. Four B atoms cap
on each side of the same edge of the planar. The CNs of CoB19 and CoB19– clusters are 16 and 14,
respectively. The binding energy of the Co atom was calculated using
the following equationwhere the structures of B19+/0/– clusters are based on the ground states of CoB19+/0/– clusters minus the Co atom. The Eb values obtained are 5.52, 6.59, and 7.40 eV
for CoB19+, CoB19, and CoB19– clusters, respectively. The Eb value increases with increasing number of electrons.
A large magnitude indicates a strong interaction between the B19 moiety and the Co atom.
Figure 1
Ground states of CoB19+, CoB19, and CoB19– at the CCSD(T) level.
Ground states of CoB19+, CoB19, and CoB19– at the CCSD(T) level.The representative low-lying
isomers and relative energies of CoB19+/0/– clusters are illustrated in Figures
S1–S3 in the Supporting Information. For the CoB19+ cluster, the six nearest isomers
2–7 are tubular-based structures with the Co atom located at
the center of the tube. Isomer 8 also possesses a bowl-shaped geometry
with the Co atom at the bottom of the bowl. Isomers 9 and 10 have
disk-like structures, where the Co atom is located at the center of
a B7 ring. Figure S1 shows that
several layered or endohedral cage structures are low-lying isomers
of the most stable state. For the CoB19 cluster, the structure
of the most stable state is similar to that of isomer 6 of the CoB19+ cluster. Notably, isomer 2 is a three-layered
structure that can also be viewed as an endohedral cage structure
with Co at the center. The CN of this isomer is up to 19. The families
of the CoB19– cluster are remarkably
different from those of CoB19+ and CoB19 clusters, where several low-lying isomers have quasi-planar structures.
For example, isomers 7–10 have quasi-planar shapes, and the
Co atom is located at the center of the B7 ring (Figure S3).Pauling’s electronegativity
value of the Co atom (1.88)
is slightly smaller than that of the B atom (2.04). The Hirshfeld
population analysis revealed that the Co atom is positively charged
with 0.23, 0.07, and 0.04 e for CoB19+, CoB190, and CoB19– clusters,
respectively. A small magnitude indicates that the charge is mainly
distributed in the B19 moiety. Spatially deformed charge
distribution, which is defined as the total charge density minus the
density of the isolated atoms, can depict changes in the charge. The
deformation electron density of CoB19+/0/– clusters is shown in Figure . A large amount of charge difference is mainly distributed
between two B atoms, indicating the covalent characteristics of the
B–B bond. The Co atom carries a small charge, and the charge
distribution between Co and B is negligible. The charge distribution
between Co and B is consistent with the Hirshfeld population analysis.
Figure 2
Deformation
electron density of CoB19+/0/– clusters
at an iso-value of 0.08 electron/Å3.
Deformation
electron density of CoB19+/0/– clusters
at an iso-value of 0.08 electron/Å3.CoB19+ and CoB19– have one unpaired electron and exhibit magnetism with a net moment
of 1.0 and 0.94 μB, respectively. CoB19 is nonmagnetic. Figure displays the spin density distribution of CoB19+ and CoB19–. For CoB19+, almost all of the density is carried by the
Co atom. Nineteen boron atoms have −0.15 μB magnetic moment. The case of CoB19– is significantly different from that of CoB19+. Almost all of the spin densities are contributed by the boron atoms
on the peripheral positions. The Co atom possesses less than −0.01
μB magnetic moment.
Figure 3
Spin density distribution of CoB19+ and CoB19– at an iso-value
of 0.02 μB/Å3 (μB is Bohr magneton).
Spin density distribution of CoB19+ and CoB19– at an iso-value
of 0.02 μB/Å3 (μB is Bohr magneton).The chemical bonding
of the closed shell CoB190 was analyzed using
the AdNDP method[48] and is shown in Figure . The presence of
three 3d lone pairs on Co with the occupation
numbers (ONs) ranging from 1.90 to 1.74 |e| indicates that few electrons
participate in bonding with the surrounding boron atoms. Figure displays two types
of 2c–2e bonds. Thirteen 2c–2e B–B bonds are
located on the two boron rings. Two 3d orbitals of Co involve the
two other 2c–2e bonds with the surrounding B atoms. The two
boron rings are bound via 10 3c–2e delocalized bonds. Two 6c–2e
bonds associated with the Co atom maintain the stability of the core.
The two other 6c–2e bonds are located on the wall of the tube
to maintain the stability of the framework. Two 16c–2e bonds
associated with the inner Co atom are observed. These highly delocalized
multicenter bonds confer CoB190 as a stable
species.
Figure 4
Chemical bonding analysis of the closed shell CoB19 cluster.
ON denotes as the occupation number.
Chemical bonding analysis of the closed shell CoB19 cluster.
ON denotes as the occupation number.The calculated energy gaps between the highest occupied molecular
orbital (HOMO) and the lowest occupied molecular orbital (LUMO) are
0.81, 1.57, and 0.59 eV for CoB19+, CoB190, and CoB19– clusters,
respectively. The CoB190 cluster possesses a
large energy gap because of their closed electron shell. Figure shows that Co has
a fivefold degenerate unfilled HOMO. Three electrons occupy five HOMOs.
The B19 moiety has three LUMOs which are slightly lower
than the HOMO of the Co atom. Hybridization of the orbitals of Co
with the HOMO of B19 leads to a closed-shell status for
CoB190. The filled level induced by Co lies
at about −5.36 and −5.71 eV. The downward shifts of
the level will result in a sizable HOMO–LUMO gap (1.57 eV)
of CoB190.
Figure 5
Molecular orbital levels of Co, CoB19, and B19. Only the most important levels that
participate in the interaction
are given. Occupied levels are solid and unoccupied levels are dot.
The number 5 indicates the degeneracy type for electron levels.
Molecular orbital levels of Co, CoB19, and B19. Only the most important levels that
participate in the interaction
are given. Occupied levels are solid and unoccupied levels are dot.
The number 5 indicates the degeneracy type for electron levels.Figure shows the
distribution of these molecular orbitals. For the CoB19+ cluster, large amounts of HOMO are localized in one
B atom at the edge of the bowl mouth. The Co atom has small contributions
to the orbital. The LUMO is mainly located on the Co atom. Meanwhile,
for the CoB190 cluster, few HOMO electrons are
localized to the Co atom. LUMO is predominantly scattered on B atoms.
For the HOMO of the CoB19– cluster, numerous
electrons are located on the Co atom. LUMO is mainly distributed in
peripheral B atoms.
Figure 6
Charge density of the HOMO (left column) and the LUMO
(right column)
at an iso-value of 0.04 electron/Å3.
Charge density of the HOMO (left column) and the LUMO
(right column)
at an iso-value of 0.04 electron/Å3.
Conclusions
Structural transitions of the CoB19 cluster at different
charge states were determined by density functional theory (DFT) calculations.
Their structures are remarkably different from those of B20 and CoB18– clusters. The CoB19+ cluster has a bowl-shaped structure, wherein the Co
atom is located at the bottom of the bowl and surrounded by eight
B atoms. The CoB190 cluster presents seven-
and eight-membered B rings, with four B atoms inserted in the waist
of the tube. For the CoB19– cluster,
the structure evolved from the Co-doped boron plane. The CNs of CoB19+, CoB19, and CoB19– clusters are 8, 16, and 14, respectively. Cluster
properties including on-site charge on the Co atom, deformed charge
distribution, spin density, and molecular frontier orbital are also
discussed. Highly delocalized electrons and closed electronic shells
confirm the stability of CoB190. CoB19+ and CoB19– possess 1.0
and 0.94 μB magnetic moments, respectively. Doping
and charging can affect the structural properties of the boron-based
clusters. Two bowl-shaped CoB19+ clusters can
be imaged to construct a cage with unique properties and thus expand
the range of potential nanostructures based on boron.
Computational
Methods
More than 50,000 CoB19 structures were
randomly generated
using the Molclus program[49] and adopted
as the initial structures for semiempirical quantum mechanical optimization
at the PM7 level by utilizing MOPAC2016.[50] Molclus is a portable program aimed to search cluster configurations
and molecular conformations. Molclus automatically invokes the Gaussian,
ORCA, or MOPAC2012/2016 program to optimize a batch of initial geometries
recorded in a .xyz trajectory file and performs statistical analysis
of the results. Initial geometries are generated randomly by the genmer
and gentor tool in the Molclus package. Cage-, ring-, and planar-like
structures can also be generated on demand. After optimization of
MOPAC2016, the energy sequence of these structures can be listed using
Molclus. Compared with other algorithms, the Molclus program can more
simply and widely sample potential energy surfaces (PESs) and cannot
fall into one region of the PES. The program can obtain the global
minimum of the PES if the sample structures are good enough. Low-lying
energy isomers obtained from MOPAC2016 were used as candidate structures
and reoptimized by all-electron DFT. Manual constructions were based
on the reported isomers of B20 clusters.[12,31,46,47] Finally, more
than 2000 possible candidate structures were obtained for each system.
These structures were then fully optimized to determine the most stable
structures at the PBE/DNP level of the theory by using the Dmol3 package[51] on the basis of DFT. The convergence criterion
for the total energy was set to 10–6 au. All structures
were fully relaxed without any symmetry constraint. All calculations
were spin-unrestricted, and smearing was set to 0.002 hartree to ensure
convergence. Vibrational frequencies were calculated using harmonic
approximation to check whether the optimized structure is a true minimum
of the system. Given that the relative energies among the first few
structures are small, the single-point energies of the top 10 lowest
energy isomers were further refined at the CCSD(T)/Co/Stuttgart/B/cc-pVTZ
level by using the Gaussian 09 package.[52]
Authors: Timur R Galeev; Constantin Romanescu; Wei-Li Li; Lai-Sheng Wang; Alexander I Boldyrev Journal: Angew Chem Int Ed Engl Date: 2012-02-01 Impact factor: 15.336
Authors: Alina P Sergeeva; Zachary A Piazza; Constantin Romanescu; Wei-Li Li; Alexander I Boldyrev; Lai-Sheng Wang Journal: J Am Chem Soc Date: 2012-10-17 Impact factor: 15.419
Authors: Zachary A Piazza; Ivan A Popov; Wei-Li Li; Rhitankar Pal; Xiao Cheng Zeng; Alexander I Boldyrev; Lai-Sheng Wang Journal: J Chem Phys Date: 2014-07-21 Impact factor: 3.488