Literature DB >> 33458241

The complete chloroplast genome of Fraxinus hupehensis and phylogenic analysis of Lamiales.

Weirui Zhang1, Peng Liu1, Jiahui Liu2, Yanxia He2.   

Abstract

Fraxinus hupehensis is a national rare and Endangered tree in the Oleaceae family, that has high commercial value owing to its slow growth, interlaced roots, intricate tree shape, and easy to shape. Here, we determined the complete chloroplast (cp) genome sequence for F. hupehensis using genome skimming sequencing. The cp genome was 155,698 bp and consisted of a large single copy (LSC) region (86,498 bp), a small single copy (SSC) region (17,803 bp) and two inverted repeats (IRs) (25,694 bp). It encodes 131 genes, including 88 protein-coding genes, 8 rRNAs and 35 tRNAs. Phylogenetic analysis indicates that F. hupehensis was relatively closely related to F. chinensis compared to other species in the Oleaceae family.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chloroplast genome; Fraxinus hupehensis; phylogenetic tree

Year:  2020        PMID: 33458241      PMCID: PMC7782264          DOI: 10.1080/23802359.2020.1829128

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

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Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

2.  The Complete Chloroplast Genome of Chinese Bayberry (Morella rubra, Myricaceae): Implications for Understanding the Evolution of Fagales.

Authors:  Lu-Xian Liu; Rui Li; James R P Worth; Xian Li; Pan Li; Kenneth M Cameron; Cheng-Xin Fu
Journal:  Front Plant Sci       Date:  2017-06-30       Impact factor: 5.753

3.  Comparative transcriptome analysis revealing the potential mechanism of seed germination stimulated by exogenous gibberellin in Fraxinus hupehensis.

Authors:  Qiling Song; Shuiyuan Cheng; Zexiong Chen; Gongping Nie; Feng Xu; Jian Zhang; Mingqin Zhou; Weiwei Zhang; Yongling Liao; Jiabao Ye
Journal:  BMC Plant Biol       Date:  2019-05-15       Impact factor: 4.215

4.  The First Genetic Map in Sweet Osmanthus (Osmanthus fragrans Lour.) Using Specific Locus Amplified Fragment Sequencing.

Authors:  Yanxia He; Wangjun Yuan; Meifang Dong; Yuanji Han; Fude Shang
Journal:  Front Plant Sci       Date:  2017-09-22       Impact factor: 5.753

  4 in total

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