Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Mitochondrial genome of Salix cardiophylla and its implications for infrageneric division of the genus of Salix.

Literature DB >> 33458213

Mitochondrial genome of Salix cardiophylla and its implications for infrageneric division of the genus of Salix.

Xiong Chen¹, Li Zhang¹, Yuan Huang¹, Fuwei Zhao².

Abstract

Salix cardiophylla was a member of the genus of Salix in family Salicaceae with unique morphological traits, and once recognized as a separate genus, Toisusu Kimura. Here, we sequenced and assembled the complete mitochondrial genome of S. cardiophylla, which was 735,173 bp in length, including 56 genes, 28 protein-coding genes, 3 rRNA genes, 25 tRNA genes, and one large inverted repeat regions with length of 13,603 bp. Phylogenetic analysis based on 26 mitochondrial CDS confirmed that S. cardiophylla is a member of Salix, and support its merge into Salix in aspect of our new insights on mitogenome phylogenomics.

Entities: Chemical Species

Keywords: Mitochondrial genome; Salix cardiophylla; phylogenomic analysis

Year: 2020 PMID： 33458213 PMCID： PMC7782887 DOI： 10.1080/23802359.2020.1827065

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

13 in total

1. Phylogenetic relationships of Salix (Salicaceae) based on rbcL sequence data.

Authors: T Azuma; T Kajita; J Yokoyama; H Ohashi
Journal: Am J Bot Date: 2000-01 Impact factor: 3.844

2. MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors: Kazutaka Katoh; Daron M Standley
Journal: Mol Biol Evol Date: 2013-01-16 Impact factor: 16.240

3. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors: Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal: Bioinformatics Date: 2012-04-27 Impact factor: 6.937

4. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors: Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal: Mol Biol Evol Date: 2014-11-03 Impact factor: 16.240

5. ModelFinder: fast model selection for accurate phylogenetic estimates.

Authors: Subha Kalyaanamoorthy; Bui Quang Minh; Thomas K F Wong; Arndt von Haeseler; Lars S Jermiin
Journal: Nat Methods Date: 2017-05-08 Impact factor: 28.547

6. Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis.

Authors: Ning Ye; Xuelin Wang; Juan Li; Changwei Bi; Yiqing Xu; Dongyang Wu; Qiaolin Ye
Journal: PeerJ Date: 2017-03-29 Impact factor: 2.984

7. Assembly and analysis of the complete Salix purpurea L. (Salicaceae) mitochondrial genome sequence.

Authors: Suyun Wei; Xuelin Wang; Changwei Bi; Yiqing Xu; Dongyang Wu; Ning Ye
Journal: Springerplus Date: 2016-10-28

8. The complete mitochondrial genome sequence of Populus davidiana Dode.

Authors: Mi Na Choi; Muho Han; Hyoshin Lee; Hong-Seog Park; Min-Young Kim; Ji-Seon Kim; Yoon-Jeong Na; Seung-Woo Sim; Eung-Jun Park
Journal: Mitochondrial DNA B Resour Date: 2017-02-16 Impact factor: 0.658

9. Genome Sequences of Populus tremula Chloroplast and Mitochondrion: Implications for Holistic Poplar Breeding.

Authors: Birgit Kersten; Patricia Faivre Rampant; Malte Mader; Marie-Christine Le Paslier; Rémi Bounon; Aurélie Berard; Cristina Vettori; Hilke Schroeder; Jean-Charles Leplé; Matthias Fladung
Journal: PLoS One Date: 2016-01-22 Impact factor: 3.240

10. Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot.

Authors: Jia-Hui Chen; Yuan Huang; Benjamin Brachi; Quan-Zheng Yun; Wei Zhang; Wei Lu; Hong-Na Li; Wen-Qing Li; Xu-Dong Sun; Guang-Yan Wang; Jun He; Zhuo Zhou; Kai-Yun Chen; Yun-Heng Ji; Ming-Ming Shi; Wen-Guang Sun; Yong-Ping Yang; Ren-Gang Zhang; Richard J Abbott; Hang Sun
Journal: Nat Commun Date: 2019-11-19 Impact factor: 14.919