Literature DB >> 33458211

The complete chloroplast genome of Saccharina latissima.

Xiao Fan1,2,3,4,5, Weifeng Xie4, Yitao Wang4, Dong Xu4, Xiaowen Zhang4, Naihao Ye4,5.   

Abstract

Saccharina latissima is a brown algal (class Phaeophyceae) belonging to the family Laminariaceae. We reported the de novo assembly and the annotation of the complete chloroplast genome of S. latissima. The circled cpDNA of S. latissima is 130,619 bp in length with a large and a small single-copy region (LSC and SSC), separated by two copies of inverted repeats (IRa and IRb). The genome contains 139 protein-coding genes (PCGs), 3 kinds of ribosomal RNAs (rRNAs), and 29 transfer RNAs (tRNAs) genes that are typical of Saccharina cpDNA. A phylogenetic analysis strongly supported the close phylogenetic affinity of S. latissima and Saccharina japonica. The complete cpDNA of S. latissima will provide valuable molecular data for further analysis of evolutionary and conservation genetic resources.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Illumina sequencing; Saccharina latissima; complete chloroplast genome

Year:  2020        PMID: 33458211      PMCID: PMC7782001          DOI: 10.1080/23802359.2020.1825999

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

1.  Sequencing of complete mitochondrial genome of Saccharina latissima ye-C14.

Authors:  Shuai Wang; Xiao Fan; Zheng Guan; Dong Xu; Xiaowen Zhang; Dongsheng Wang; Yu Miao; Naihao Ye
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-01-28       Impact factor: 1.514

2.  Chloroplast genome of one brown seaweed, Saccharina japonica (Laminariales, Phaeophyta): its structural features and phylogenetic analyses with other photosynthetic plastids.

Authors:  Xiuliang Wang; Zhanru Shao; Wandong Fu; Jianting Yao; Qiuping Hu; Delin Duan
Journal:  Mar Genomics       Date:  2013-01-07       Impact factor: 1.710

3.  Saccharina genomes provide novel insight into kelp biology.

Authors:  Naihao Ye; Xiaowen Zhang; Miao Miao; Xiao Fan; Yi Zheng; Dong Xu; Jinfeng Wang; Lin Zhou; Dongsheng Wang; Yuan Gao; Yitao Wang; Wenyu Shi; Peifeng Ji; Demao Li; Zheng Guan; Changwei Shao; Zhimeng Zhuang; Zhengquan Gao; Ji Qi; Fangqing Zhao
Journal:  Nat Commun       Date:  2015-04-24       Impact factor: 14.919

4.  Phytoplankton pangenome reveals extensive prokaryotic horizontal gene transfer of diverse functions.

Authors:  Xiao Fan; Huan Qiu; Wentao Han; Yitao Wang; Dong Xu; Xiaowen Zhang; Debashish Bhattacharya; Naihao Ye
Journal:  Sci Adv       Date:  2020-04-29       Impact factor: 14.136

  4 in total

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