Literature DB >> 33458204

Complete chloroplast genome sequence of the rose apple, Syzygium jambos (Myrtaceae).

Zhixia Sun1,2, Qingping Huang1, Chen Feng2.   

Abstract

Plants in the genus Syzygium have been widely used as traditional medicine, fruit crops, and ornamental trees. In this study, we reported the complete chloroplast genome of Syzygium jambos (L.) Alston which was known as rose apple. The chloroplast genome of this species is 158541 bp in length, including a pair of inverted repeat regions (IRs) (26076 bp) that is divided by a large single copy area (LSC) (88036 bp) and a small single copy area (SSC) (18353 bp). The circular chloroplast genome of S. jambos contains 132 unique genes, composing of 85 protein-coding genes, 39 tRNA genes and 8 rRNA genes. Phylogenetic analysis indicates that S. jambos is clustered with species in genus Syzygium. This complete chloroplast genome of S. jambos will provide a powerful tool to accelerate breeding, biotechnological and phylogenetic study.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Illumina sequencing; Syzygium; chloroplast genome; traditional medicine

Year:  2020        PMID: 33458204      PMCID: PMC7782344          DOI: 10.1080/23802359.2020.1826000

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  14 in total

1.  Evolution of exceptional species richness among lineages of fleshy-fruited Myrtaceae.

Authors:  Ed Biffin; Eve J Lucas; Lyn A Craven; Itayguara Ribeiro da Costa; Mark G Harrington; Michael D Crisp
Journal:  Ann Bot       Date:  2010-05-11       Impact factor: 4.357

2.  Interpreting the modern distribution of Myrtaceae using a dated molecular phylogeny.

Authors:  Andrew H Thornhill; Simon Y W Ho; Carsten Külheim; Michael D Crisp
Journal:  Mol Phylogenet Evol       Date:  2015-07-26       Impact factor: 4.286

3.  Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots.

Authors:  Michael J Moore; Pamela S Soltis; Charles D Bell; J Gordon Burleigh; Douglas E Soltis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

4.  Impact of Postharvest Nitric Oxide Treatment on Lignin Biosynthesis-Related Genes in Wax Apple (Syzygium samarangense) Fruit.

Authors:  Yuqi Hao; Fahe Chen; Guangbin Wu; Weiya Gao
Journal:  J Agric Food Chem       Date:  2016-10-27       Impact factor: 5.279

5.  Syzygium aromaticum L.: Traditional herbal medicine against cagA and vacA toxin genes-producing drug resistant Helicobacter pylori.

Authors:  Wagih A El-Shouny; Sameh S Ali; Hegazy M Hegazy; Manar K Abd Elnabi; Asmaa Ali; Jianzhong Sun
Journal:  J Tradit Complement Med       Date:  2019-05-15

6.  Chemical profile and in vivo hypoglycemic effects of Syzygium jambos, Costus speciosus and Tapeinochilos ananassae plant extracts used as diabetes adjuvants in Puerto Rico.

Authors:  Jannette Gavillán-Suárez; Alexandra Aguilar-Perez; Natalie Rivera-Ortiz; Karla Rodríguez-Tirado; Wanda Figueroa-Cuilan; Lorelein Morales-Santiago; Gerónimo Maldonado-Martínez; Luis A Cubano; Michelle M Martínez-Montemayor
Journal:  BMC Complement Altern Med       Date:  2015-07-22       Impact factor: 3.659

7.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

8.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

9.  PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.

Authors:  Xiao-Jian Qu; Michael J Moore; De-Zhu Li; Ting-Shuang Yi
Journal:  Plant Methods       Date:  2019-05-21       Impact factor: 4.993

10.  Chloroplast genome of tropical and sub-tropical fruit tree Syzygium samarangense (Myrtaceae).

Authors:  Jin Liu; Shu-Bang Ni; Cheng Zheng; Chao Shi; Ying-Feng Niu
Journal:  Mitochondrial DNA B Resour       Date:  2018-08-13       Impact factor: 0.658

View more
  1 in total

Review 1.  Syzygium jambos L. Alston: An Insight Into its Phytochemistry, Traditional Uses, and Pharmacological Properties.

Authors:  Melvin Adhiambo Ochieng; Widad Ben Bakrim; Gabin Thierry M Bitchagno; Mona F Mahmoud; Mansour Sobeh
Journal:  Front Pharmacol       Date:  2022-01-24       Impact factor: 5.810

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.