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Literature DB >> 33458191

The complete chloroplast genome of Phlegmariurus phlegmaria, one representative species of genus Phlegmariurus.

Li-Ming Tang¹, Ri-Hong Jiang², Jia-Cheng An².

Abstract

Phlegmariurus (Herter) Holub is the largest genus of Lycopodiaceae, with about 250 species distributed in the tropics and subtropics of the world. Phlegmariurus phlegmaria is the representative species of Phlegmariurus. In this study, we reported the complete chloroplast genome of P. phlegmaria. This complete chloroplast genome is 1,49,711 bp in size. In total, 134 genes were identified, including 84 protein-coding genes, 42 tRNA genes, and eight rRNA genes. In phylogenetic analysis, a close relationship with genus Huperzia was supported by maximum-likelihood (ML) tree. The complete plastome of P. phlegmaria will provide potential genetic resources to understand the evolution of lycophytes.

Entities: Disease Species

Keywords: Lycopodiaceae; Phlegmariurus phlegmaria; chloroplast genome; lycophytes phylogeny

Year: 2020 PMID： 33458191 PMCID： PMC7782255 DOI： 10.1080/23802359.2020.1820392

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

10 in total

1. MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors: Kazutaka Katoh; Daron M Standley
Journal: Mol Biol Evol Date: 2013-01-16 Impact factor: 16.240

2. Molecular phylogenetics and the morphology of the Lycopodiaceae subfamily Huperzioideae supports three genera: Huperzia, Phlegmariurus and Phylloglossum.

Authors: Ashley R Field; Weston Testo; Peter D Bostock; Joseph A M Holtum; Michelle Waycott
Journal: Mol Phylogenet Evol Date: 2015-10-19 Impact factor: 4.286

1 in total

1. The complete chloroplast genome of the medical plant Huperzia crispata from the Huperziaceae family: structure, comparative analysis, and phylogenetic relationships.

Authors: Dengpan Yin; Bo Pang; Haibo Li; Qiao Liu; Yufeng Zhai; Nan Ma; Tongtong Chen; Hongjun Shen; Qiaojun Jia; Dekai Wang
Journal: Mol Biol Rep Date: 2022-10-05 Impact factor: 2.742

1 in total

The complete chloroplast genome of Phlegmariurus phlegmaria, one representative species of genus Phlegmariurus.

1. MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

2. Molecular phylogenetics and the morphology of the Lycopodiaceae subfamily Huperzioideae supports three genera: Huperzia, Phlegmariurus and Phylloglossum.

3. Bandage: interactive visualization of de novo genome assemblies.

4. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

5. GeSeq - versatile and accurate annotation of organelle genomes.

6. ModelFinder: fast model selection for accurate phylogenetic estimates.

7. The complete chloroplast genome sequence of Huperzia javanica (sw.) C. Y. Yang in Lycopodiaceae.

8. The complete chloroplast genome sequence of Phlegmariurus carinatus.

9. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.

10. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.

1. The complete chloroplast genome of the medical plant Huperzia crispata from the Huperziaceae family: structure, comparative analysis, and phylogenetic relationships.