Literature DB >> 33458184

The complete nucleotide molecular sequence of plastid genome of Zanthoxylum armatum (Rutaceae).

Wei Sa1, Jian Liang1, Qian-Han Shang1, Mi-Li Liu2, Ma-Li Wang2, Zhong-Hu Li2.   

Abstract

Zanthoxylum armatum DC. (Rutaceae) is a shrub and/or tree species with the important medicinal and economic values. In this study, the plastid genome of Z. armatum was characterized by Illumina Hiseq 2500 sequencing platform. In total, the plastid genome is 158,557 bp in length, and comprises a large single copy region of 85,752 bp, a small single copy region of 17,605 bp, and two inverted repeat regions of 27,600 bp. The complete plastid genome contains 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis suggested that Z. armatum and the congeneric Z. simulans clustered into an evolutionary clade with the high support.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Zanthoxylum armatum; phylogenetic analysis; plastid genome

Year:  2020        PMID: 33458184      PMCID: PMC7782098          DOI: 10.1080/23802359.2020.1823263

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

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Authors:  Zhi-Qiang Wu; Song Ge
Journal:  Mol Phylogenet Evol       Date:  2011-11-10       Impact factor: 4.286

2.  MODELTEST: testing the model of DNA substitution.

Authors:  D Posada; K A Crandall
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Authors: 
Journal:  J Nat Prod       Date:  1999-02       Impact factor: 4.050

4.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

5.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

6.  CPGAVAS2, an integrated plastome sequence annotator and analyzer.

Authors:  Linchun Shi; Haimei Chen; Mei Jiang; Liqiang Wang; Xi Wu; Linfang Huang; Chang Liu
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

7.  Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors:  Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal:  Nucleic Acids Res       Date:  2013-05-09       Impact factor: 16.971

  7 in total

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