Literature DB >> 33458174

The complete chloroplast genome sequence of a popular ornamental plant Calibrachoa hybrida (Solanaceae: Petunioideae).

Guofeng Liu1, Miaomiao Sun1, Peishan Zou1, Wei Zhang1, Jianzhong Ni1.   

Abstract

Calibrachoa hybrida is a popular ornamental plant with colorful flowers. We present here the complete chloroplast genome sequence of C. hybrida. With a total length of 156,099 bp, it is comprised of a large single-copy (LSC) region of 86,695 bp and a small single-copy (SSC) region of 18,694 bp separated by two inverted repeats (IRs) of 25,355 bp for each. A total of 132 genes were identified, consisting of 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis using complete chloroplast genomes clustered C. hybrida together with petunia into the subfamily Petunioideae within the family Solanaceae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Calibrachoa hybrida; Petunioideae; chloroplast genome; ornamental plant; phylogenetic analysis

Year:  2020        PMID： 33458174      PMCID： PMC7781906          DOI： 10.1080/23802359.2020.1823257

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  10 in total

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2.  Secrets of the world's most popular bedding plant unlocked.

Authors:  Alexander R van der Krol; Richard G H Immink
Journal:  Nat Plants       Date:  2016-05-27       Impact factor: 15.793

3.  Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida.

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Journal:  Nat Plants       Date:  2016-05-27       Impact factor: 15.793

4.  Biogeographical, ecological, and phylogenetic analyses clarifying the evolutionary history of Calibrachoa in South American grasslands.

Authors:  Geraldo Mäder; Loreta B Freitas
Journal:  Mol Phylogenet Evol       Date:  2019-09-10       Impact factor: 4.286

5.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

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Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

7.  Petunia, Your Next Supermodel?

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Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

9.  Comparison of petunia and calibrachoa in carotenoid pigmentation of corollas.

Authors:  Sanae Kishimoto; Chihiro Oda-Yamamizo; Akemi Ohmiya
Journal:  Breed Sci       Date:  2019-02-19       Impact factor: 2.086

10.  GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.

Authors:  Jian-Jun Jin; Wen-Bin Yu; Jun-Bo Yang; Yu Song; Claude W dePamphilis; Ting-Shuang Yi; De-Zhu Li
Journal:  Genome Biol       Date:  2020-09-10       Impact factor: 13.583
  10 in total

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